PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G250700.1
Common NamePHAVU_003G250700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family LBD
Protein Properties Length: 177aa    MW: 19620.4 Da    PI: 6.8898
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G250700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601118.3e-3531021100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +C aCk++rr+C +dC +apyfpae+ ++fa++h++FG  nv+++lk+++ e r+ ++++l+y+Aear+rdPv+G+vgvi + ++ l+ lk
  Phvul.003G250700.1   3 PCGACKYQRRRCRADCLMAPYFPAESIQRFAYIHHVFGGGNVSNILKSTKLELRKWTARALTYQAEARVRDPVHGCVGVICEQEESLRILK 93 
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ++l+++k+e
  Phvul.003G250700.1  94 EKLEKAKRE 102
                         ***999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.5082103IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-333100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MTPCGACKYQ RRRCRADCLM APYFPAESIQ RFAYIHHVFG GGNVSNILKS TKLELRKWTA  60
RALTYQAEAR VRDPVHGCVG VICEQEESLR ILKEKLEKAK REVAQNVGPE VMQKMIEQCS  120
SDSHANMVDL EAPLAITVDD ADLSSWDPFS AWEPAFSRLQ PPQGGDAKGE TIVPPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-26310311111LOB family transfactor Ramosa2.1
5ly0_B2e-26310311111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G250700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156006.11e-131hypothetical protein PHAVU_003G250700g
TrEMBLV7CFE91e-129V7CFE9_PHAVU; Uncharacterized protein
STRINGXP_007156006.11e-130(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1945945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.16e-35ASYMMETRIC LEAVES 2-like 1