PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G251800.2
Common NamePHAVU_003G251800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 133aa    MW: 15843.3 Da    PI: 11.1427
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G251800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-184699356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        k++++++eq++ Le+ F  +++++ e++ +LA +lg++ rqV vWFqNrR ++k
  Phvul.003G251800.2 46 KKRKLSAEQVNLLEKNFCIQHKLQSERKDQLAFELGMDPRQVAVWFQNRRFRWK 99
                        66799************************************************9 PP
2HD-ZIP_I/II103.22.1e-3346127283
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                         kkr+ls+eqv+lLE++F  ++kL++erK +la eLg++prqvavWFqnrR R+ktk+lE++y+ Lk+ +++   ++++L++ 
  Phvul.003G251800.2  46 KKRKLSAEQVNLLEKNFCIQHKLQSERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNLHETTLLQKCHLQTR 127
                         9*****************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.79141101IPR001356Homeobox domain
SMARTSM003894.6E-1644105IPR001356Homeobox domain
SuperFamilySSF466891.67E-1845109IPR009057Homeodomain-like
CDDcd000861.82E-1146102No hitNo description
PfamPF000462.0E-154699IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-1948108IPR009057Homeodomain-like
PRINTSPR000318.7E-57281IPR000047Helix-turn-helix motif
PROSITE patternPS0002707699IPR017970Homeobox, conserved site
PRINTSPR000318.7E-58197IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MNHRAVEAHM RLFSHQYPTA FTQLTPPQQA KPRRKRNKNG VMGSTKKRKL SAEQVNLLEK  60
NFCIQHKLQS ERKDQLAFEL GMDPRQVAVW FQNRRFRWKT KKLEEEYSNL KNLHETTLLQ  120
KCHLQTRDIT TR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13348RKRNKNGVMGSTKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G251800.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-103AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156021.13e-95hypothetical protein PHAVU_003G251800g
SwissprotO232082e-42ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLV7CFG26e-94V7CFG2_PHAVU; Uncharacterized protein
STRINGXP_007156020.19e-90(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.19e-45homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]