PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G252000.1
Common NamePHAVU_003G252000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bZIP
Protein Properties Length: 340aa    MW: 35883.3 Da    PI: 5.76
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G252000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_174.81.2e-23257319163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkr++rkq+NRe+ArrsR+RK+ae+e L+++v++L +eN++L++el++l++e++kl+se+
  Phvul.003G252000.1 257 ERELKRQKRKQSNRESARRSRLRKQAECEDLQKRVETLGSENRTLREELQRLSEECEKLTSEN 319
                         89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077779.2E-30194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165968.0E-6116227No hitNo description
Gene3DG3DSA:1.20.5.1703.1E-19252317No hitNo description
SMARTSM003382.9E-22257321IPR004827Basic-leucine zipper domain
PfamPF001708.0E-21257319IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.415259322IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.45E-11260316No hitNo description
CDDcd147029.37E-24262312No hitNo description
PROSITE patternPS000360264279IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGAGEESTTK SSKSSSSVQE TPTVPAYPDW SSSMQAYYAP GAAPPPFFAS TVASPTPHPY  60
LWGSQHPLMP PYGTPVPYPA LYPPGSIYAH HPSMAVTPSV VQQSTEIEGK GTDGKDRDSS  120
KKLKGTSANA GSKAGESGKA GSGSGNDGMS QSGESGSEGS SNASDENNNQ QESATNKKGS  180
FDLMLVDGAN AQNNSGGAIS QSSMPGKPVV SMPATNLNIG MDLWNASSGG GEAAKMRHNQ  240
SGAPGVVALG EQWIQDEREL KRQKRKQSNR ESARRSRLRK QAECEDLQKR VETLGSENRT  300
LREELQRLSE ECEKLTSENS SIKEELERMC GPEAVANLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273279RRSRLRK
2273280RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G252000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankPVU573890.0U57389.1 Phaseolus vulgaris bZIP transcriptional repressor ROM1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156023.10.0hypothetical protein PHAVU_003G252000g
SwissprotP427741e-108GBF1_ARATH; G-box-binding factor 1
TrEMBLQ411130.0Q41113_PHAVU; BZIP transcriptional repressor ROM1
STRINGXP_007156023.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59333450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.16e-80G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]
  7. Chern MS,Eiben HG,Bustos MM
    The developmentally regulated bZIP factor ROM1 modulates transcription from lectin and storage protein genes in bean embryos.
    Plant J., 1996. 10(1): p. 135-48
    [PMID:8758983]