PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G252200.1
Common NamePHAVU_003G252200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 545aa    MW: 60610.7 Da    PI: 6.5918
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G252200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS287.34.3e-881795432374
                GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                         +e L+++A++++s++++laqa+L+rl+++  +sp ++p++R+a++f+ AL++ l++s     +a + + +s  + +++++ +k+fs +sPi
  Phvul.003G252200.1 179 IEELIRAADCFDSSHFQLAQAILERLNNRliRSPMAKPLHRAAFHFKDALHSILSGSN----RAGSNRLSSMAEIVQTIKTFKAFSGISPI 265
                         679************************9999************************933....34455555555699*************** PP

                GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                         + fs +t+Nqa+le ++g++ vH+iDf+i+ G+Q+++L++++a+++ + +p lRiT+v+++e   + e + ++e+L++fA+ lg++ + ++
  Phvul.003G252200.1 266 PMFSIFTTNQALLETLNGSSFVHVIDFEIGLGIQYASLMKEIAEKAaGASPLLRITAVVPEE--YAVESRLVRENLNQFAHDLGIRAQVDF 354
                         *********************************************977899*********66..99999********************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalf 268
                         +  +++e++++++ r+  gE++aV l+ +++  l + ++      ++L  v+++ P vvv+v+ e  ++   ++sF ++++++le+ys+++
  Phvul.003G252200.1 355 VPLRTFETVSFKAVRFVDGEKIAVLLSPSIFCRLGSGGANVG---AFLADVRRMAPGVVVFVDGEgwTEAtAAASFRRGVVNSLEFYSMML 442
                         9999*****************************977776666...********************553334677***************** PP

                GRAS 269 dsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                         dsl+a++++    e+ + +E  ll+++i  +v  + ++       +  Wre++  aG++pv+ls++a  qa++ll+kv+ +g++v++++++
  Phvul.003G252200.1 443 DSLDASVAAGGggEWVRRIEMLLLRPKIFAAVESARRR-------APPWREAFYGAGMRPVQLSQFADYQAECLLAKVQIRGFHVDKRHAE 526
                         ******9998888999*************999876665.......89******************************************** PP

                GRAS 358 lvlgWkdrpLvsvSaWr 374
                         lvl+W++r++v++SaWr
  Phvul.003G252200.1 527 LVLCWHERAMVATSAWR 543
                         ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.461152523IPR005202Transcription factor GRAS
PfamPF035141.5E-85179543IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MRVPSSPQPN THSPNPNLLL HTLPNTTNPT FTYEPTSVLD LCRSPSPEKK PTVPKPEPQH  60
NTNNITTITT TNNNNLDLDD HVLPNSDWWE SIMKDLALPE DSPTPLSKPN NINPCIPDFP  120
PSHDPPFDHP PDFTSLSEIY NQNLPYNYTT TNALDHSFQD LNHHHHNPTN NVNNNWDFIE  180
ELIRAADCFD SSHFQLAQAI LERLNNRLIR SPMAKPLHRA AFHFKDALHS ILSGSNRAGS  240
NRLSSMAEIV QTIKTFKAFS GISPIPMFSI FTTNQALLET LNGSSFVHVI DFEIGLGIQY  300
ASLMKEIAEK AAGASPLLRI TAVVPEEYAV ESRLVRENLN QFAHDLGIRA QVDFVPLRTF  360
ETVSFKAVRF VDGEKIAVLL SPSIFCRLGS GGANVGAFLA DVRRMAPGVV VFVDGEGWTE  420
ATAAASFRRG VVNSLEFYSM MLDSLDASVA AGGGGEWVRR IEMLLLRPKI FAAVESARRR  480
APPWREAFYG AGMRPVQLSQ FADYQAECLL AKVQIRGFHV DKRHAELVLC WHERAMVATS  540
AWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2119554225378Protein SCARECROW
5b3h_A2e-2119554224377Protein SCARECROW
5b3h_D2e-2119554224377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G252200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156025.10.0hypothetical protein PHAVU_003G252200g
SwissprotO232101e-157SCL15_ARATH; Scarecrow-like protein 15
TrEMBLV7CCY80.0V7CCY8_PHAVU; Uncharacterized protein
STRINGXP_007156025.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-149GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]