PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G252400.1
Common NamePHAVU_003G252400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 507aa    MW: 53064 Da    PI: 8.0344
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G252400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-055880123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F r  nL+ H r H
  Phvul.003G252400.1 58 FVCEICNKGFQRDQNLQLHRRGH 80
                        89*******************88 PP
2zf-C2H211.30.0011134156123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H +++
  Phvul.003G252400.1 134 WKCDKCSKKYAVQSDWKAHSKVC 156
                         58*****************9877 PP
3zf-C2H211.70.00081164182523
                         TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                         dCg++Fsr++++ +H   +
  Phvul.003G252400.1 164 DCGTVFSRRDSFITHRAFC 182
                         9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.47E-55780No hitNo description
PfamPF121718.1E-55880IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0175880IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9495880IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM0035523099129IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.47E-5129154No hitNo description
SMARTSM00355150134154IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MTVDLDNVST ASGEASISSS GNQTKPTPKR KRNLPGMPDP EAEVIALSPK TLLATNRFVC  60
EICNKGFQRD QNLQLHRRGH NLPWKLRQRS TKEVRKRVYV CPEPACVHHD PSRALGDLTG  120
IKKHFCRKHC EKKWKCDKCS KKYAVQSDWK AHSKVCGNRE YKCDCGTVFS RRDSFITHRA  180
FCDALAKESM RSHTDVTKAN EENDSKVLTD SPPPEVAAAT ATSPAQSNSA ISSGGQTQNP  240
ELPENNLPQV TEEPQALTAT SGSCGSNSSN NCSTSNGGAT SNSNSSSMFA SLFASSTSTG  300
TQQSQTPAFS DLVRAMGPPD HHADISAPSS SEAISLCLST SNASPIFATG GQEHRQYASP  360
PQPAMSATAL LQKAAQMGAA ATNASLLRGF GIVSSSSAST SSGQQNGLQW GQPQLESESG  420
SVPAALGLSL PCDGDSGLNE LMMGTPSMFG PKHTTLDFLG LGMAAGGGLS ALITSIGGGL  480
DVTAAAAAAT FGNGEFSGKD TGRRSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-32131191464Zinc finger protein JACKDAW
5b3h_F6e-32131191464Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G252400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156028.10.0hypothetical protein PHAVU_003G252400g
SwissprotQ9LVQ71e-175IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLV7CCU40.0V7CCU4_PHAVU; Uncharacterized protein
STRINGXP_007156028.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-106C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]