PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G260100.1
Common NamePHAVU_003G260100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family DBB
Protein Properties Length: 195aa    MW: 21491.6 Da    PI: 7.6292
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G260100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.8e-071343434
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                        + C+ +e+  ++ fC  ++  lC+ C  + H
  Phvul.003G260100.1 13 TLCDACESAAAIVFCAADEAALCRACDKKVH 43
                        57*************************9998 PP
2zf-B_box31.34.1e-1062102238
            zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 
                         + ++C+ +e+ ++ ++Ce++++ lC +C +  H g    H+
  Phvul.003G260100.1  62 DVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGgkrtHE 102
                         5799**************************99966666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.5E-91057IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0681057IPR000315B-box-type zinc finger
CDDcd000217.26E-61355No hitNo description
PfamPF006431.0E-51352IPR000315B-box-type zinc finger
SuperFamilySSF578451.63E-55897No hitNo description
SMARTSM003361.2E-1161106IPR000315B-box-type zinc finger
PROSITE profilePS501199.52761106IPR000315B-box-type zinc finger
PfamPF006435.1E-862102IPR000315B-box-type zinc finger
CDDcd000213.61E-864103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MQNNTPSTSI MRTLCDACES AAAIVFCAAD EAALCRACDK KVHMCNKLAS RHARVGLASP  60
SDVPRCDICE NAPAFFYCET DGSSLCLQCD MIVHVGGKRT HERYLLFRQR VEFPGDKPGK  120
SENPASQPLD PGETKRGQNA LPKIKMGEKQ QNYRMPLILT PEPNADEHAM MGTKMIDLNM  180
KPQRIHEPAS NNQQ*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G260100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156118.11e-145hypothetical protein PHAVU_003G260100g
SwissprotC0SVM59e-74BBX19_ARATH; B-box zinc finger protein 19
TrEMBLV7CD341e-143V7CD34_PHAVU; Uncharacterized protein
STRINGXP_007156118.11e-144(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.14e-76DBB family protein