PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.003G267300.1

Common Name

PHAVU_003G267300g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

MYB_related

Protein Properties

Length: 169aa MW: 19332.5 Da PI: 6.241

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G267300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.8	1.1e-12	101	146	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+ W+ eE++l++ + +++Gg Wk+I++ + ++t+ q+ s+ qky Phvul.003G267300.1 101 RKTWSIEEHKLFLLGLRMYGGS-WKKISENVVRTKTPSQLASHAQKY 146 789***************88.*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.256	96	151	IPR017930	Myb domain
SuperFamily	SSF46689	2.24E-14	97	151	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-13	100	150	IPR006447	Myb domain, plants
SMART	SM00717	7.3E-9	100	149	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-10	101	146	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-6	101	145	IPR009057	Homeodomain-like
CDD	cd00167	1.54E-6	103	147	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MSRVEGNEWE SALNDELFNI NFEDIFGVSI DQMLGDVNYP EETSNLQGQP LSQQSFSDHP 60 LTQLNESVTH VESGPTQLPD NPPNSEHQNG GCGPSRQRQP RKTWSIEEHK LFLLGLRMYG 120 GSWKKISENV VRTKTPSQLA SHAQKYFIRQ KMEPSQRKRK SIHDITLEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	160	QRKRKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G267300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007156208.1	1e-124	hypothetical protein PHAVU_003G267300g, partial
TrEMBL	V7CDE7	1e-122	V7CDE7_PHAVU; Uncharacterized protein (Fragment)
STRING	XP_007156208.1	1e-123	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6068	32	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	3e-23	MYB family protein

Link Out ? help Back to Top
Phytozome	Phvul.003G267300.1
Entrez Gene	18636165