PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G273900.1
Common NamePHAVU_003G273900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bZIP
Protein Properties Length: 418aa    MW: 44756.1 Da    PI: 6.519
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G273900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1697.7e-22308370163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ e+++++ e ++l+se+
  Phvul.003G273900.1 308 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLKEENATLRAEVSRIRSEFEQLRSEN 370
                         89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.0E-29197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165967.5E-51136275No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-18301368No hitNo description
SMARTSM003385.3E-22308372IPR004827Basic-leucine zipper domain
PfamPF001704.2E-20308370IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.691310373IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.5E-11311368No hitNo description
CDDcd147022.21E-23313363No hitNo description
PROSITE patternPS000360315330IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGSSDMDKTP KEKESKTPPA TSQEQSPPTT GMATINPDWS NFQTYSPMPP HGFLASSPQA  60
HPYMWGVQHI MPPYGTPAHP YVAMYPHGGI YAHPSIPPGS YPFSPFAMAS PNGIADTSGN  120
NPGSIEVGAK PPEVKEKLPV KRSKESASGG SLNMWITGKN NDLSKTTGES ANGIHSKSGD  180
SASDGTSEGS DENSQNDSQL KSGERQDSFE DEPSQNGSSA HAPQNGVHSR PQTLVNQTMP  240
IPISTASAPG AVPGPTTNLN IGMDYWGTPT SSAIPALHGK VSSTAVAGGM ITAGSRDGVQ  300
SQIWLQDERE LKRQRRKQSN RESARRSRLR KQAECDELAQ RADVLKEENA TLRAEVSRIR  360
SEFEQLRSEN ASLKERLGEI PGVATPGNED VRSGQNDQHV SNDTQQSRQK EAVQGVH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324330RRSRLRK
2324331RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G273900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3697900.0AF369790.1 Phaseolus vulgaris bZIP transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156287.10.0hypothetical protein PHAVU_003G273900g
SwissprotQ501B21e-155BZP16_ARATH; bZIP transcription factor 16
TrEMBLV7CHA30.0V7CHA3_PHAVU; Uncharacterized protein
STRINGXP_007156287.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-147basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]