PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.003G287600.1

Common Name

PHAVU_003G287600g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Dof

Protein Properties

Length: 346aa MW: 37122.3 Da PI: 8.811

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G287600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.5e-39	28	87	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+ +kcprCds ntkfCyynnysl+qPr+fCk+CrryWt+GGalrnvP+Ggg+rknkk+ Phvul.003G287600.1 28 PEQGVKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKKV 87 67899*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	26	86	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-32	30	86	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.171	32	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	34	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MVPPEGMPPP TPKDHEVTEG RKTTRPAPEQ GVKCPRCDSP NTKFCYYNNY SLTQPRHFCK 60 TCRRYWTNGG ALRNVPIGGG CRKNKKVKPS SSSSSSSSKD FNFHGLTVPP SVDFNLGGLP 120 FPSRLTTFNT QQHLPAPPFN QFSSFGDVAS SSTTSLSAFS AFQDPPAAVS NPLLGLVPPS 180 PDLWAPRRSE RASLSDPLNS AMQTLQTMEA MNVHSSLASS IESLSNINQD LHLKLQQQRM 240 ATMMFGGDSQ KGERSVAMNG FGNQKVSSSK PENLPAVSSI NGGPSGETVT AASTEWFFGN 300 SFPSVSPSTS NGAANVNHIS NDPNNNWSSA LAWGDLQHQP YTALP*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MVPPEGMPPP TPKDHEVTEG RKTTRPAPEQ GVKCPRCDSP NTKFCYYNNY SLTQPRHFCK  60
TCRRYWTNGG ALRNVPIGGG CRKNKKVKPS SSSSSSSSKD FNFHGLTVPP SVDFNLGGLP  120
FPSRLTTFNT QQHLPAPPFN QFSSFGDVAS SSTTSLSAFS AFQDPPAAVS NPLLGLVPPS  180
PDLWAPRRSE RASLSDPLNS AMQTLQTMEA MNVHSSLASS IESLSNINQD LHLKLQQQRM  240
ATMMFGGDSQ KGERSVAMNG FGNQKVSSSK PENLPAVSSI NGGPSGETVT AASTEWFFGN  300
SFPSVSPSTS NGAANVNHIS NDPNNNWSSA LAWGDLQHQP YTALP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G287600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-178	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007156457.1	0.0	hypothetical protein PHAVU_003G287600g
TrEMBL	V7CHR3	0.0	V7CHR3_PHAVU; Uncharacterized protein
STRING	XP_007156457.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3854	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	5e-40	Dof family protein

Link Out ? help Back to Top
Phytozome	Phvul.003G287600.1
Entrez Gene	18636375