PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G288500.1
Common NamePHAVU_003G288500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 522aa    MW: 58204.8 Da    PI: 5.9971
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G288500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.22.4e-14243302155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a+ k++g
  Phvul.003G288500.1 243 SIYRGVTRHRWTGRYEAHLWDnTCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAAIKYWG 302
                         57*******************666564488446*************************98 PP
2AP248.71.9e-15346396255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Phvul.003G288500.1 346 AFRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 396
                         58***************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.81E-17243311IPR016177DNA-binding domain
PfamPF008473.2E-11243302IPR001471AP2/ERF domain
CDDcd000181.01E-22243311No hitNo description
Gene3DG3DSA:3.30.730.105.2E-16244310IPR001471AP2/ERF domain
SMARTSM003802.8E-28244316IPR001471AP2/ERF domain
PROSITE profilePS5103219.151244310IPR001471AP2/ERF domain
PRINTSPR003672.9E-6245256IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-17345406IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-17346405IPR001471AP2/ERF domain
PROSITE profilePS5103218.531346404IPR001471AP2/ERF domain
SMARTSM003808.5E-29346410IPR001471AP2/ERF domain
PfamPF008471.3E-9347396IPR001471AP2/ERF domain
PRINTSPR003672.9E-6386406IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
TNHNTLFYFL SSCLWLIITS PQFSHTQTYT VQRLEQRLVF LFGHLFVSAE NPFETVVFLL  60
IWSNCRQTMA GATNWLTFSL TPVEVVRSPD SSSHCFLDNF YATNGWTNSK GLMDSEIENQ  120
PLLEPKMEDF FENQTETTQQ DDSSLTQIYD HGSASVYFGD QQDLNFFPDF KAFPSTNSGS  180
ELDDSASDRT NLVAPAELGA HLGDSCKGAM SLCDAVAHEK TIIAAAEFDT PQKVSHAIGQ  240
RTSIYRGVTR HRWTGRYEAH LWDNTCRREG QARKGRQVYL GGYDKEEKAA RAYDLAAIKY  300
WGSTATTNFP ICTYTKELEE MKYAGKQEFI ASLRRKSSGF SRGASAFRGV TRHHQQGRWQ  360
ARIGRVAGNK DLYLGTFATE EEAAEAYDIA AIKFRGAGAV TNFEMSRYDV ESILNSSLPV  420
GGVAKRLKLS PELENKAFDE QLQYTKESST INFSAIQPIA SIPYDSANSC YPQNLYHHFH  480
ASNSGSSTAQ DSAAIVSNAT ALSILPPPPV PEFFLWPPQS F*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G288500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-107AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156467.10.0hypothetical protein PHAVU_003G288500g, partial
SwissprotQ6J9N81e-130AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLV7CHS50.0V7CHS5_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007156467.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-130AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]