PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.004G010100.1

Common Name

PHAVU_004G010100g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

LBD

Protein Properties

Length: 164aa MW: 18421.6 Da PI: 5.2462

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.004G010100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.6	4.5e-43	10	107	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkC +dC +apyfp e+p+kf nvhk+FGasnv+k+l+++++ +red+++sl+yeAear++dPvyG+vg i+ lq+q+ +l+ Phvul.004G010100.1 10 PCAACKFLRRKCMPDCLFAPYFPPEEPQKFVNVHKIFGASNVSKILNEVQPYQREDTVNSLAYEAEARIKDPVYGCVGAISVLQRQVLKLQ 100 7**************************************************************************************** PP DUF260 92 aelallk 98 +el++++ Phvul.004G010100.1 101 KELDATN 107 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.125	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.4E-43	10	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MASSSYSNSP CAACKFLRRK CMPDCLFAPY FPPEEPQKFV NVHKIFGASN VSKILNEVQP 60 YQREDTVNSL AYEAEARIKD PVYGCVGAIS VLQRQVLKLQ KELDATNVDL IRYNTCNEMP 120 NSSNHHEGRS KIINDDDDLY YASSSTNWNN NPCDENGYPR GDI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-63	3	119	4	119	LOB family transfactor Ramosa2.1
5ly0_B	2e-63	3	119	4	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.004G010100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	1e-139	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007150999.1	1e-120	hypothetical protein PHAVU_004G010100g
Swissprot	Q8L8Q3	2e-66	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	V7C0U9	1e-119	V7C0U9_PHAVU; Uncharacterized protein
STRING	XP_007150999.1	1e-119	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	1e-68	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Phvul.004G010100.1
Entrez Gene	18631645

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]