PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G012000.1
Common NamePHAVU_004G012000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 242aa    MW: 27694.7 Da    PI: 8.1387
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G012000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.7e-174491148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
  Phvul.004G012000.1 44 KGPWTMEEDLILINYIANHGEGVWNSLAKASGLKRTGKSCRLRWLNYL 91
                        79********************************************97 PP
2Myb_DNA-binding53.84.5e-1797140146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ TteE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  Phvul.004G012000.1  97 RGNITTEEQLLIFELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 140
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-233794IPR009057Homeodomain-like
PROSITE profilePS5129417.2823991IPR017930Myb domain
SuperFamilySSF466892.0E-2941138IPR009057Homeodomain-like
SMARTSM007178.6E-134393IPR001005SANT/Myb domain
PfamPF002491.3E-154491IPR001005SANT/Myb domain
CDDcd001671.16E-94691No hitNo description
PROSITE profilePS5129423.68992146IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.7E-2495147IPR009057Homeodomain-like
SMARTSM007173.2E-1596144IPR001005SANT/Myb domain
PfamPF002491.9E-1597140IPR001005SANT/Myb domain
CDDcd001678.81E-12101140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MISTSSSSSS FSSSSFSLSY VHMYKIMDKK PCNSSSSHDP EVRKGPWTME EDLILINYIA  60
NHGEGVWNSL AKASGLKRTG KSCRLRWLNY LRPDVRRGNI TTEEQLLIFE LHAKWGNRWS  120
KIAKHLPGRT DNEIKNFWRT RIQKHMKQAE NSQQQGNNSN ISETNDHHHH QASSSTSLVS  180
NMALQIETYS APSYQENLES FPTQFPTITD QSSSCTNHNI NSNHNYWNIE DFWPMQLLNG  240
D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-273914622128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00324DAPTransfer from AT3G01530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G012000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0898411e-149BT089841.1 Soybean clone JCVI-FLGm-2P22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151019.10.0hypothetical protein PHAVU_004G012000g
SwissprotP813912e-92MYB05_ANTMA; Myb-related protein 305
TrEMBLV7C0W81e-179V7C0W8_PHAVU; Uncharacterized protein
STRINGXP_007151019.11e-180(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.13e-76myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]