PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G029900.1
Common NamePHAVU_004G029900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 355aa    MW: 40361.2 Da    PI: 6.5621
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G029900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.44.5e-56201461129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+++yL +kv ++ +   ++i e+d++k+ePwdLp ++k +ekewyfFs rd+ky+tg+r+nrat +gyWkatgkdke
  Phvul.004G029900.1  20 LPPGFRFHPTDEELITHYLSQKVLDSCFCS-RAIGEADLNKCEPWDLPCMAKMGEKEWYFFSVRDRKYPTGQRTNRATGAGYWKATGKDKE 109
                         79***********************99877.89***************8888899************************************ PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         +++  ++l+g+kktLvfykgrap+gekt+Wvmheyrle
  Phvul.004G029900.1 110 IYK-AKKLIGMKKTLVFYKGRAPSGEKTNWVMHEYRLE 146
                         ***.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-6314170IPR003441NAC domain
PROSITE profilePS5100559.04520170IPR003441NAC domain
PfamPF023658.2E-3021145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDAMENSNHR EIMAEQAFDL PPGFRFHPTD EELITHYLSQ KVLDSCFCSR AIGEADLNKC  60
EPWDLPCMAK MGEKEWYFFS VRDRKYPTGQ RTNRATGAGY WKATGKDKEI YKAKKLIGMK  120
KTLVFYKGRA PSGEKTNWVM HEYRLEDDHS MHNPHKKAMN NWAICRIFEK TNCGKKMQIS  180
GLVRFTSFGK DMPSLMDSSP YNTSEAKAVM GESSHFSDPN QSEDLRTHDE HIVDSLETLM  240
MASSSSYSSN PFDVSPASWT LPKSSPTVPH QSLQVGNSHC STYFMDQEQS MLGMLIENHG  300
SSSSLRTHRP QDKDFDADIS SLMYNDEMFQ RSFGNQEYSS PSLGHVYTSG LWGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-561817615171NO APICAL MERISTEM PROTEIN
1ut4_B9e-561817615171NO APICAL MERISTEM PROTEIN
1ut7_A9e-561817615171NO APICAL MERISTEM PROTEIN
1ut7_B9e-561817615171NO APICAL MERISTEM PROTEIN
3swm_A9e-561817618174NAC domain-containing protein 19
3swm_B9e-561817618174NAC domain-containing protein 19
3swm_C9e-561817618174NAC domain-containing protein 19
3swm_D9e-561817618174NAC domain-containing protein 19
3swp_A9e-561817618174NAC domain-containing protein 19
3swp_B9e-561817618174NAC domain-containing protein 19
3swp_C9e-561817618174NAC domain-containing protein 19
3swp_D9e-561817618174NAC domain-containing protein 19
4dul_A9e-561817615171NAC domain-containing protein 19
4dul_B9e-561817615171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G029900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-122AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151241.10.0hypothetical protein PHAVU_004G029900g
SwissprotQ9FLJ21e-106NC100_ARATH; NAC domain-containing protein 100
TrEMBLV7C1T30.0V7C1T3_PHAVU; Uncharacterized protein
STRINGXP_007151241.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-108NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]