PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G045800.1
Common NamePHAVU_004G045800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bZIP
Protein Properties Length: 197aa    MW: 22732.1 Da    PI: 6.1475
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G045800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.32.5e-1680138563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         ++ rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L+++l++ ++  +++ +e+
  Phvul.004G045800.1  80 RKHRRMISNRESARRSRMRKQKHLDELWSQVMWLRNENHQLIEKLNHVSESHDQVLQEN 138
                         578***********************************************999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.6E-1476140IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.71478141IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.5E-1280152No hitNo description
SuperFamilySSF579593.24E-1380130No hitNo description
PfamPF001703.0E-1480138IPR004827Basic-leucine zipper domain
CDDcd147024.20E-1881132No hitNo description
PROSITE patternPS0003608398IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MQTGEVSALN YLLPSNPSPF PPNNYTTIQN NIPTFQFPRF STQLYGHNTP YDFSPQSSCI  60
SSNSTSDEAD EQQLSLINER KHRRMISNRE SARRSRMRKQ KHLDELWSQV MWLRNENHQL  120
IEKLNHVSES HDQVLQENAQ LKEEASELRQ MMRDMQIHSP CPSFTPFQDD VPCTSPYLRS  180
DSSNQSNSCN NIDLLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19299RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G045800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151433.11e-144hypothetical protein PHAVU_004G045800g
SwissprotQ9FMC27e-43BZP43_ARATH; Basic leucine zipper 43
TrEMBLV7BZS91e-143V7BZS9_PHAVU; Uncharacterized protein
STRINGXP_007151433.11e-144(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.15e-56basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]