PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G072500.1
Common NamePHAVU_004G072500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family LBD
Protein Properties Length: 245aa    MW: 26185.2 Da    PI: 6.9268
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G072500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.81.9e-38481491101
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC  +C++ap+f  +q ++kfa+vhk+FGasnv+kll+++p ++r++a++++ yeA+ar++dPvyG+v++il+lqqq++++
  Phvul.004G072500.1  48 PCGACKFLRRKCIGGCIFAPHFGTDQgAAKFAAVHKVFGASNVSKLLSNIPANRRHEAATTISYEAQARLSDPVYGCVSTILSLQQQVASM 138
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkeel 101
                         +ae+a+++++l
  Phvul.004G072500.1 139 QAEVAMVQTQL 149
                         ******99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.33947149IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-3848146IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSEPHDLNTN GGDHSAGSGS RRRGPGFRRA MATQTQDEPM LGTSPATPCG ACKFLRRKCI  60
GGCIFAPHFG TDQGAAKFAA VHKVFGASNV SKLLSNIPAN RRHEAATTIS YEAQARLSDP  120
VYGCVSTILS LQQQVASMQA EVAMVQTQLM NSRFAYASAL ESTQVQQPNM NAAALQPAYS  180
NNSCASTNLM NLSSFNNNPA GFDLAMHTAP SSSTLEPLQL TRLSKCEEDE EEEESRTQPG  240
FSHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-364815511115LOB family transfactor Ramosa2.1
5ly0_B1e-364815511115LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G072500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-130AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151760.10.0hypothetical protein PHAVU_004G072500g
SwissprotQ9SRV36e-68LBD20_ARATH; LOB domain-containing protein 20
TrEMBLV7C0V50.0V7C0V5_PHAVU; Uncharacterized protein
STRINGXP_007151760.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-69LOB domain-containing protein 20