PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.004G075500.2

Common Name

PHAVU_004G075500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

NAC

Protein Properties

Length: 210aa MW: 23900.7 Da PI: 9.469

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.004G075500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98.4	1.1e-30	15	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lp GfrF Ptd+el+ +yLk+k+ + +l++ +vi+++d+++++Pw Lp + +++ yfFs+ k +++++ sg Wk gk+ke Phvul.004G075500.2 15 LPIGFRFCPTDQELLLHYLKNKAFALQLPA-SVISDCDVFQTDPWLLPGDL---REKRYFFSNCGKV------NKKSAGSGCWKCVGKEKE 95 699*************************.99***********544...457898775......4567899********* PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + ++e++g+kktL+f kg++ + +t+Wvmh+ rl Phvul.004G075500.2 96 IRRCeSNEVIGMKKTLMFCKGSNDT--RTRWVMHQLRL 131 98757788*******887776..9*****886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-37	9	152	IPR003441	NAC domain
PROSITE profile	PS51005	35.819	15	152	IPR003441	NAC domain
Pfam	PF02365	8.3E-20	16	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MERLQGFVVK GGIKLPIGFR FCPTDQELLL HYLKNKAFAL QLPASVISDC DVFQTDPWLL 60 PGDLREKRYF FSNCGKVNKK SAGSGCWKCV GKEKEIRRCE SNEVIGMKKT LMFCKGSNDT 120 RTRWVMHQLR LLTSYPYQMA VGDFAVYVIF QKRKKTKTSN RRVSSSRKLE RVDDVKASMM 180 DFKVEFGDDN IELPPPSSPS LSEDCSETT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-21	13	132	15	143	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-21	13	132	15	143	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-21	13	132	15	143	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-21	13	132	15	143	NO APICAL MERISTEM PROTEIN
3swm_A	2e-21	13	132	18	146	NAC domain-containing protein 19
3swm_B	2e-21	13	132	18	146	NAC domain-containing protein 19
3swm_C	2e-21	13	132	18	146	NAC domain-containing protein 19
3swm_D	2e-21	13	132	18	146	NAC domain-containing protein 19
3swp_A	2e-21	13	132	18	146	NAC domain-containing protein 19
3swp_B	2e-21	13	132	18	146	NAC domain-containing protein 19
3swp_C	2e-21	13	132	18	146	NAC domain-containing protein 19
3swp_D	2e-21	13	132	18	146	NAC domain-containing protein 19
4dul_A	2e-21	13	132	15	143	NAC domain-containing protein 19
4dul_B	2e-21	13	132	15	143	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.004G075500.2

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	3e-85	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007151795.1	1e-156	hypothetical protein PHAVU_004G075500g
TrEMBL	V7C0Y7	1e-154	V7C0Y7_PHAVU; Uncharacterized protein
STRING	XP_007151796.1	1e-144	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.2	3e-37	NAC domain containing protein 41

Link Out ? help Back to Top
Phytozome	Phvul.004G075500.2
Entrez Gene	18632335