PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G076900.1
Common NamePHAVU_004G076900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 396aa    MW: 44976.4 Da    PI: 6.4237
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G076900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.71.8e-56171441129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdee++++yL++kv ++ +++ ++i e+d +k+ePwdLpkk+k +ek+wyfF++rd+ky+tg r+nrat+sgyWkatgkdke
  Phvul.004G076900.1  17 LPPGFRFHPTDEEIITCYLTEKVLDRGFSA-TAIGEADFNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDKE 106
                         79**************************99.88***************99999************************************** PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         +++ k++lvg+kktLvfy+grapkgekt+Wvmhe+rle
  Phvul.004G076900.1 107 IYKGKNNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLE 144
                         ***99******************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-6214168IPR003441NAC domain
PROSITE profilePS5100558.03617168IPR003441NAC domain
PfamPF023654.9E-2918143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MMEEPVVVNK GDDPLDLPPG FRFHPTDEEI ITCYLTEKVL DRGFSATAIG EADFNKCEPW  60
DLPKKAKMGE KDWYFFCQRD RKYPTGMRTN RATQSGYWKA TGKDKEIYKG KNNLVGMKKT  120
LVFYRGRAPK GEKTNWVMHE FRLEGKFACY NLPKAAKDEW VVCKVFHKSN TDVNKRVLPI  180
NPGIGLLRMN SIGEDLFDFS SLPPLVDPLF DQTSHKHIDN DFKDTTNSTN TPSSSAAKPP  240
SDGYYLPYFM NNNHHMLMMM KPEEHRIYET PTTNINYAST SQGNFNSNNP MAIGTSSNSL  300
QNSTSPFNNM FQDYCMHQGK NSFQQLKMEQ FSNTNQPVVS ASQDTCLSND RNTDTSSVVS  360
KQDNMGRNKA LYEDLDQAPS SVATLSDLDC LWDDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-501517115168NO APICAL MERISTEM PROTEIN
1ut4_B3e-501517115168NO APICAL MERISTEM PROTEIN
1ut7_A3e-501517115168NO APICAL MERISTEM PROTEIN
1ut7_B3e-501517115168NO APICAL MERISTEM PROTEIN
3swm_A3e-501517118171NAC domain-containing protein 19
3swm_B3e-501517118171NAC domain-containing protein 19
3swm_C3e-501517118171NAC domain-containing protein 19
3swm_D3e-501517118171NAC domain-containing protein 19
3swp_A3e-501517118171NAC domain-containing protein 19
3swp_B3e-501517118171NAC domain-containing protein 19
3swp_C3e-501517118171NAC domain-containing protein 19
3swp_D3e-501517118171NAC domain-containing protein 19
4dul_A3e-501517115168NAC domain-containing protein 19
4dul_B3e-501517115168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G076900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151811.10.0hypothetical protein PHAVU_004G076900g
TrEMBLV7C3D40.0V7C3D4_PHAVU; Uncharacterized protein
STRINGXP_007151811.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-113Arabidopsis NAC domain containing protein 87