PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G079200.1
Common NamePHAVU_004G079200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 254aa    MW: 28620.7 Da    PI: 8.7558
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G079200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.95e-17183217135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Phvul.004G079200.1 183 CTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL 217
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-15177231IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-15179241No hitNo description
PROSITE profilePS5011411.095181213IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-13181215IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.24E-11182229No hitNo description
PROSITE patternPS003440183208IPR000679Zinc finger, GATA-type
PfamPF003207.2E-15183217IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDMDVCRNVS VSSELPTLDD LFSHQNMEVD FGMEWLSVFV EDCFSSKPSC LLAPTGVQTT  60
STSSKPSSTM QRPQQSYCHL QNFVVPGKAR SKRKRLSAPR TKHTLSTWSH NFSSEVLCSD  120
PPLLKQAYWL ADSELIVPKK KDEQEVKVEI VVRKEKLGEC CDEVEVNNSS NNNNGQHPIP  180
RRCTHCLSQR TPQWRAGPLG PKTLCNACGV RYKSGRLLPE YRPAKSPTFV SYLHSNSHKR  240
VMEMRMSVLS SEK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G079200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151835.10.0hypothetical protein PHAVU_004G079200g
TrEMBLV7C1260.0V7C126_PHAVU; Uncharacterized protein
STRINGXP_007151835.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.15e-41GATA transcription factor 9