PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G095400.1
Common NamePHAVU_004G095400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 657aa    MW: 72575.6 Da    PI: 5.1793
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G095400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix926.1e-2969152186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k+++ g++r++k+Ckek+en+ k++k++keg++++t+++  t+++fdql+
  Phvul.004G095400.1  69 RWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLADLGYHRNAKKCKEKFENVYKYHKRTKEGRSGKTEGK--TYRFFDQLQ 152
                         8********************************************************************986665..5******98 PP
2trihelix104.67.2e-33475560187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev+aLi++r+++e++++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea
  Phvul.004G095400.1 475 RWPKMEVQALIDLRTNLETKYQENGPKGPLWEEISSLMRKMGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 560
                         8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.002466128IPR001005SANT/Myb domain
PfamPF138371.6E-1868154No hitNo description
PROSITE profilePS500906.73768126IPR017877Myb-like domain
CDDcd122035.38E-2368133No hitNo description
SMARTSM007178.1E-4472534IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-4473531IPR009057Homeodomain-like
PROSITE profilePS500907.143474532IPR017877Myb-like domain
PfamPF138371.1E-21474561No hitNo description
CDDcd122034.36E-27474539No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MLGDSAVLGT GGGGGSGDAV VAVGGGAASG GAHDGAVDVA GGGGGGGSNS GDDERGRVEE  60
GDRSFGGNRW PRQETLALLK IRSDMDVAFR DASVKGPLWE EVSRKLADLG YHRNAKKCKE  120
KFENVYKYHK RTKEGRSGKT EGKTYRFFDQ LQALENNPAI HAIQSPTPPS KPPPVTTTPL  180
PATPVSIVVT TTPSSIMSLP PTTTVPLPPV SNNATVPSTT TLPIPQAILA LTTSSYPSSN  240
PTTYFPTQTP NPTTNNTNNK NPPSFPNIPT DLLSNSSSSS TSSEETTTEG GGARRKRKRK  300
WKDFFERLMK EVIEKQEELQ RRFLEAIEKR EQERVTREES WRMQEMQRIN REREILAQER  360
SIAAAKDAAV MAFLQKMAEH QQEENNLQPA LNTNNNNSIT IASQQPVPQA TPTPTPQQKQ  420
TTTVPETPPV QSLAPQPQQQ QHQVQQQQQL VVTNVEINKA DNNGENLMMG ASSSRWPKME  480
VQALIDLRTN LETKYQENGP KGPLWEEISS LMRKMGYNRN AKRCKEKWEN INKYFKKVKE  540
SNKKRPEDSK TCPYFHQLEA LYKEKNKVEG QMKPESMMAP LMVQPEQQWP PQQVVPPEIT  600
MEDAQNDPMD ARNHEDAEEE EEDKEIADED DDEDDEGGSY EIVASKPASA GDGSAE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293298RRKRKR
2293299RRKRKRK
3294299RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G095400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152027.10.0hypothetical protein PHAVU_004G095400g
TrEMBLV7C5320.0V7C532_PHAVU; Uncharacterized protein
STRINGXP_007152027.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-55Trihelix family protein