PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G095500.1
Common NamePHAVU_004G095500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 443aa    MW: 50753.5 Da    PI: 6.6296
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G095500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix811.6e-25117212185
            trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                         +Wt+++v++Li+a+++++e+  +++          +kk++W++vsk+m+erg ++sp+qC++k+++lnkrykk++++ +++ +++++++ +
  Phvul.004G095500.1 117 KWTDKMVRLLITAVSYIGEDATSDCggsrrkftvlQKKGKWKSVSKVMAERGHRVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVESPS 207
                         7*********************9988889999999**********************************************5689988888 PP

            trihelix  81 yfdql 85 
                         ++d +
  Phvul.004G095500.1 208 LLDVI 212
                         87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-23115239No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEGNLSQGGM VQGGSSFSGF DLPGSMRVNR QGHHPHSVNH HQTHPCQGPS VHSSVQDGFP  60
LTMGTMQNCD QTMSMTEFSQ GDRNKNSPSD ESFAEEGVDG HHEGVRGKKG SPWQRVKWTD  120
KMVRLLITAV SYIGEDATSD CGGSRRKFTV LQKKGKWKSV SKVMAERGHR VSPQQCEDKF  180
NDLNKRYKKL NDMLGRGTSC QVVESPSLLD VIDYLSEKEK EEVRKILSSK HLFYEEMCSY  240
HNCNRLHLPH DLELQRSLQL AHRNRDDHDN DDIRRSHHDD HDEDDLEVET DDHDDFEDNY  300
ATHADSRGVY GEVGRPMKRL KPGQGQEDAA TFGCALSSQE YNKTSNPYMV QSDVNQAAPE  360
KMSAAWLQKQ WFESRSLQLE EQKLQIQVEM LELEKQRFKW QKFSKKKDRE LEKLKLENER  420
MKLENERIAL ELKRKGVGAD FN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G095500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152028.10.0hypothetical protein PHAVU_004G095500g
TrEMBLV7C1G50.0V7C1G5_PHAVU; Uncharacterized protein
STRINGXP_007152028.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-150sequence-specific DNA binding transcription factors