PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G109900.1
Common NamePHAVU_004G109900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 654aa    MW: 72008.3 Da    PI: 6.8487
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G109900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS283.27.7e-872856532374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         +++L+e+A a+ +g+  +a ++L+rl+  +s++   + Rl+ +++ AL++r++      ++  pp   +e    e++ +++l  e s ++k
  Phvul.004G109900.1 285 KQTLMEAASAIVEGKYDMAMEILNRLNGPNSNN--RTDRLTDCMVLALKSRMNP-----VEYPPP--VAELFGYEHAESTQLILENSMCFK 366
                         689***********************9988765..679***************9.....322222..222349999*************** PP

                GRAS  93 fshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                         ++ ++aN aIlea+ +e   +r  ++Df+i+qG Q+p L++aL++R ++  +l+i +v++  +g +++++++g+ L+++Ae+ ++ fef++
  Phvul.004G109900.1 367 IGLMAANLAILEAAFEEkteNRFCVLDFEIGQGKQYPHLFNALSAR-GQNVTLKIVAVAE--NGGEDRVRAVGDSLSHLAERKRIGFEFRL 454
                         ************97555466999**********************9.6669*********..77*************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                         +++ +l++l+ e+L ++++E+l Vn++++l +++desvs+e++rde+L+ vk+l P+vv+vveqe++ n+++Fl+r++e+l++y +l++s+
  Phvul.004G109900.1 455 ITTPKLSELTRESLGCNENEVLMVNFAFKLNKIPDESVSIENQRDELLRRVKGLAPRVVTVVEQEMNANTAPFLARVAETLSFYGMLLESI 545
                         9999*************************************************************************************** PP

                GRAS 272 eak...lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk...sdgyrveeesg 356
                         ea    ++ ++++r+ +E+  l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  pls+++a+++k+ l  ++   + g +v+ee+g
  Phvul.004G109900.1 546 EAMnnnISINNSDRVRLEEG-LSRKLHNTVACEGRDRVERCEVFGKWRARMSMAGFELKPLSQNMAESIKSRLTATNnrvNSGLTVKEENG 635
                         77534477788*********.*************************************************9998766445679******** PP

                GRAS 357 slvlgWkdrpLvsvSaWr 374
                          ++ gW++++L+++S+Wr
  Phvul.004G109900.1 636 GICSGWMGKTLTVASVWR 653
                         *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.619258630IPR005202Transcription factor GRAS
PfamPF035142.7E-84285653IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MSSPGFTGGG GASDYFAGAG GFSGRSIPAA TMNNPNGAAT ATANLHPLYR TQQQNLPAMF  60
LDPASQQIAQ RQTPTFIGKR TLTEFQTYNQ TYNQTYNQPN TNPNHVLSNL LLRSVKPRTS  120
FSQGSMDGFP ELHNQNPSVY HQQQQRFGVP LLHQFRPQPI NLPSNGSGPM PSPNYGYRNS  180
NLGMPQNRVR LSVPLPLPVQ VSEPEKKIMD HRLLELEKQL LEDNDEGEEA DAASVITTSE  240
WSETYQNLIS PGPVQKLVST SPTSSTTSST SSSSSVASPA SGCSKQTLME AASAIVEGKY  300
DMAMEILNRL NGPNSNNRTD RLTDCMVLAL KSRMNPVEYP PPVAELFGYE HAESTQLILE  360
NSMCFKIGLM AANLAILEAA FEEKTENRFC VLDFEIGQGK QYPHLFNALS ARGQNVTLKI  420
VAVAENGGED RVRAVGDSLS HLAERKRIGF EFRLITTPKL SELTRESLGC NENEVLMVNF  480
AFKLNKIPDE SVSIENQRDE LLRRVKGLAP RVVTVVEQEM NANTAPFLAR VAETLSFYGM  540
LLESIEAMNN NISINNSDRV RLEEGLSRKL HNTVACEGRD RVERCEVFGK WRARMSMAGF  600
ELKPLSQNMA ESIKSRLTAT NNRVNSGLTV KEENGGICSG WMGKTLTVAS VWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2130965330375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G109900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152201.10.0hypothetical protein PHAVU_004G109900g
TrEMBLV7C4K60.0V7C4K6_PHAVU; Uncharacterized protein
STRINGXP_007152201.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-141SCARECROW-like 8