PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G124300.1
Common NamePHAVU_004G124300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 242aa    MW: 27670.3 Da    PI: 7.6353
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G124300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.85.2e-1570122155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++ h+e+Er+RR+++ ++++ Lr+llP  +   ++K s ++   +Av+YIk++q
  Phvul.004G124300.1  70 KKMIHKEIERQRRQEMTTCYASLRSLLPLEF--IKGKRSISDHMNEAVNYIKHMQ 122
                         5788*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1467145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.07569121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.72E-1170126No hitNo description
PfamPF000104.0E-1270122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1271145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-775127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MFPLQRGNEL VIQFSNSSNH QQHKISQDLI LDDYASLDDN VSGKKFSRSQ PENLFCEENK  60
KNHDSNEHVK KMIHKEIERQ RRQEMTTCYA SLRSLLPLEF IKGKRSISDH MNEAVNYIKH  120
MQNNIKELGA KRDELKKLSS HSNMEISHEG LHTSCNFTVH ENNGVIGIEI TSGFREEKPK  180
VSKLLQLLIQ EGHEVVSCLS SEVNGRLLHS VQCEVNHSNC VDLSELRRKV SKAFPSFKCS  240
D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G124300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-142AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152370.11e-177hypothetical protein PHAVU_004G124300g
TrEMBLV7C2K61e-175V7C2K6_PHAVU; Uncharacterized protein
STRINGXP_007152370.11e-176(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.12e-39bHLH family protein