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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Phvul.004G156700.1 | ||||||||
| Common Name | PHAVU_004G156700g | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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| Family | NAC | ||||||||
| Protein Properties | Length: 327aa MW: 36624.3 Da PI: 7.4572 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 176.8 | 6.2e-55 | 8 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrFhPtdeel+++yL++kv++++++ ++i+ vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke
Phvul.004G156700.1 8 LPPGFRFHPTDEELITCYLTNKVSDSSFTS-KAIAVVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKE 97
79*************************999.88***************988999************************************* PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
++ +g lvg+kktLvfy+grap+gek++Wvmheyrle
Phvul.004G156700.1 98 IFG-NGVLVGMKKTLVFYRGRAPRGEKSNWVMHEYRLE 134
***.9*******************************85 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 8.63E-65 | 4 | 154 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 59.855 | 8 | 154 | IPR003441 | NAC domain |
| Pfam | PF02365 | 7.9E-29 | 9 | 133 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 327 aa Download sequence Send to blast |
MNLMEENLPP GFRFHPTDEE LITCYLTNKV SDSSFTSKAI AVVDLNKSEP WDLPGKASMG 60 EKEWYFFSLR DRKYPTGLRT NRATESGYWK TTGKDKEIFG NGVLVGMKKT LVFYRGRAPR 120 GEKSNWVMHE YRLENKHHLR PSKNEWVVCR VFQKSLQVKK PQQTNSSPPE SPCDTVSMAN 180 EFGDFELPNL NSIANSSGGL TNNISGDTFM NADLSNSVNT NMNLAMNWAV ASEVQVPSLP 240 SLPWPSGLLS PTISVNSLLL KALQLRSYQQ REAADHLASY MAQGVCQVVG TDLSSNLRAS 300 SSKVQECMPQ QQQQQQEQPF NLDSIW* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1ut4_A | 4e-56 | 3 | 160 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-56 | 3 | 160 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-56 | 3 | 160 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-56 | 3 | 160 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 5e-56 | 3 | 160 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 5e-56 | 3 | 160 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 5e-56 | 3 | 160 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 5e-56 | 3 | 160 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 5e-56 | 3 | 160 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 5e-56 | 3 | 160 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 5e-56 | 3 | 160 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 5e-56 | 3 | 160 | 15 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 4e-56 | 3 | 160 | 12 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 4e-56 | 3 | 160 | 12 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Phvul.004G156700.1 |
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AP015044 | 1e-158 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_007152755.1 | 0.0 | hypothetical protein PHAVU_004G156700g | ||||
| TrEMBL | V7C3Q3 | 0.0 | V7C3Q3_PHAVU; Uncharacterized protein | ||||
| STRING | XP_007152755.1 | 0.0 | (Phaseolus vulgaris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF4946 | 33 | 56 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G18400.1 | 1e-105 | NAC domain containing protein 58 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Phvul.004G156700.1 |
| Entrez Gene | 18633183 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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