PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G161800.1
Common NamePHAVU_004G161800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 355aa    MW: 40924.7 Da    PI: 4.3345
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G161800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.52e-14119204186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W+++e+ +L+e+  ++  +l+r++l+   W+ev++k+ +e +  rs +qC++ +++l+++ykk+k+ + +     s ++++f++++
  Phvul.004G161800.1 119 EWSDHETFVLLEVWGDKFLQLGRNSLRSEEWREVAEKVsEELKTDRSVTQCRSVLDKLKRKYKKEKTKMDEM-GMGSCKWAFFKKMD 204
                         5*************************************888999**************************97.666779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-19118206No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDDMEDDARY PPKSFSLNRQ NPSHRHKHPV RAAPYHRPMP TRYDQSVVDD DDDDDEENEH  60
EDFNDDNDEG ENGYDENDVV GYPRIPKKRK VLVAPGSYEF APRFKLSYGS RGSGSSGEEW  120
SDHETFVLLE VWGDKFLQLG RNSLRSEEWR EVAEKVSEEL KTDRSVTQCR SVLDKLKRKY  180
KKEKTKMDEM GMGSCKWAFF KKMDMLMASS ARQEYGLACG VDSGEYVFMN TRIYLNRSNG  240
FDEMRDSPGE SESDDDDEEE EECGGGGGAA AEDEEDETSF RVLADSIQKF GKIYEKIENS  300
KRQQMMELEK MRLDFNRELE LQKKQILERA QAEIAKIQEG DEEDTDTSTE NLSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G161800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152813.10.0hypothetical protein PHAVU_004G161800g
TrEMBLV7C3R90.0V7C3R9_PHAVU; Uncharacterized protein
STRINGXP_007152813.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-85Trihelix family protein