PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G166300.1
Common NamePHAVU_004G166300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 334aa    MW: 36223.4 Da    PI: 5.8065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G166300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.00041982361255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Phvul.004G166300.1 198 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 236
                         6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.528186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-10196246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.09E-6196240No hitNo description
Gene3DG3DSA:4.10.280.102.8E-7200242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MNRGVLQSSP VQQMITGNPN WWNININSMP PQAPPFFSTT PSNFPIPYAP TSLPFPSWNE  60
NQELPESWSQ LLMSGVVDEQ GKVGMGQFQS KKLENWEDQM LAQAPNASLV DVKQENSANS  120
YVYGHGNEEL QSSKPSWSPK SCVTSFSSSM LDFSNSNTDA RHPPPDRSSE CNSSAAGGAL  180
KKARVQPSGT TQATFKVRKE KLGDRITALH QLVSPFGKTD TASVLLEAIG YIRFLQSQIE  240
ALSLPYLSGG PGNGRQQNSV QGEKNCIFPE DPGQLLNENC LKRKAAGEPD TQEEQQKGLR  300
SRGLCLVPVS CTLQVGSDNG ADYWAPALGG GFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G166300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0938720.0BT093872.1 Soybean clone JCVI-FLGm-24O24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152861.10.0hypothetical protein PHAVU_004G166300g
SwissprotQ8S3D16e-99BH068_ARATH; Transcription factor bHLH68
TrEMBLV7C6D50.0V7C6D5_PHAVU; Uncharacterized protein
STRINGXP_007152861.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-94bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]