PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G169400.1
Common NamePHAVU_004G169400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 158aa    MW: 18121.7 Da    PI: 4.8969
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G169400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3361.2e-11781382584
                         TT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3  25 ehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkl 84 
                         e + + +e++++ ++d+ g ++e+ l+ + k++   yvl +GW +F++++gL + D + ++ 
  Phvul.004G169400.1  78 EEE-DVREGIQVNVYDRGGHEFEMMLKKWVKDSNefYVLNRGWFSFCNQHGLGQEDLIALRG 138
                         333.446889****************7744444448*********************99883 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100177.23E-1075155No hitNo description
Gene3DG3DSA:2.40.330.104.3E-978144IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1179152IPR015300DNA-binding pseudobarrel domain
PfamPF023622.9E-981139IPR003340B3 DNA binding domain
PROSITE profilePS508638.75587157IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MAASSSNSGR GKGMVEGKKE AKEIQFNDEL QLEFILDAGI VKDCELSLPY GVQLTNDKWN  60
LFLPLLGFEE TLIGFLKEEE DVREGIQVNV YDRGGHEFEM MLKKWVKDSN EFYVLNRGWF  120
SFCNQHGLGQ EDLIALRGFR HSITDMLSFV VTFRRMR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G169400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152898.11e-113hypothetical protein PHAVU_004G169400g
TrEMBLV7C4001e-111V7C400_PHAVU; Uncharacterized protein
STRINGXP_007152898.11e-112(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2134023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.16e-08B3 family protein