PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G169500.1
Common NamePHAVU_004G169500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 161aa    MW: 18878.7 Da    PI: 5.1112
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G169500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.76.5e-11751402183
                         HH.HTT...---..--SEEEEEETTS-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS
                  B3  21 kfaeeh...ggkkeesktltledesgrsWevkliy.rkksgr.yvltkGWkeFvkangLkegDfvvFk 83 
                         +f++e    ++k+     +t++d+ g ++ + l+  +k s + yvl +GW +F++++ L+e+D+v ++
  Phvul.004G169500.1  75 QFLKEEeeqELKEGL--PVTVYDKGGHEFPMMLKKfDKDSTSyYVLNRGWFNFCDQKLLQENDVVALR 140
                         444444554555444..59999***********6558888889**********************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.94E-1074147IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-875141IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-777144IPR015300DNA-binding pseudobarrel domain
CDDcd100174.61E-988158No hitNo description
PROSITE profilePS508638.99591160IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MAEGSSNDAG KGKGIAQERE SWREIMQKDE MQVEFVFTIG HVKDLELSMP YRAQLTNDKW  60
NLFLRVPYLE EILLQFLKEE EEQELKEGLP VTVYDKGGHE FPMMLKKFDK DSTSYYVLNR  120
GWFNFCDQKL LQENDVVALR TFRHAITDKL SFLVTFIKLR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G169500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152899.11e-116hypothetical protein PHAVU_004G169500g
TrEMBLV7C6921e-115V7C692_PHAVU; Uncharacterized protein
STRINGXP_007152899.11e-116(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2134023