PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G171600.2
Common NamePHAVU_004G171600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HRT-like
Protein Properties Length: 426aa    MW: 47329.8 Da    PI: 9.8983
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G171600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like52.58.1e-17251280130
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                         iCGv l+dG  C+r+P+++R RC eHKGmR
  Phvul.004G171600.2 251 ICGVSLGDGLLCRRPPAEKRLRCSEHKGMR 280
                         8****************************9 PP
2HRT-like61.51.3e-19316346131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         iCG+il+dGs+C+rqPv+gRKRC+eHKG+Ri
  Phvul.004G171600.2 316 ICGIILNDGSTCRRQPVEGRKRCHEHKGRRI 346
                         8*****************************7 PP
3HRT-like60.82.1e-19386416131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         iCG+il+dGs C+rqPvkgRKRC+eHKG+R+
  Phvul.004G171600.2 386 ICGIILNDGSACTRQPVKGRKRCHEHKGRRT 416
                         8****************************95 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MWCGPFNCSC YELLLLWFQI LIGPSDWEDH SRGKEGCARY RIHNLPQESN PGVYELGIAV  60
AGGGLGRQIS KLAPHPDRIV VVYLGQADNV RTRLQCYGRT GAHLESAISD DSSLQKGLPL  120
FQKVFSQGFS IVYRWAPTQN KEDALRTEDQ LLRTFDYAWN TSNNGIRRPE EILQKLKKIA  180
SGTRTLSDVA KVLLPFTQKQ VGIRIKSCKL PQDDDNGSYN FITRVFSFNR SRPRIVQSTS  240
GVVQEQENAK ICGVSLGDGL LCRRPPAEKR LRCSEHKGMR ANVSIAKAIS VAKSESNVPQ  300
TVVGSPVDES MTNTNICGII LNDGSTCRRQ PVEGRKRCHE HKGRRIGASV QKRGNGYRYQ  360
NVSHGVEDSL QTLVGSPVDE SISNTICGII LNDGSACTRQ PVKGRKRCHE HKGRRTRASF  420
HVNQK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G171600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152923.10.0hypothetical protein PHAVU_004G171600g
TrEMBLV7C4210.0V7C421_PHAVU; Uncharacterized protein
STRINGXP_007152922.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.13e-87effector of transcription2