PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G173500.1
Common NamePHAVU_004G173500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 270aa    MW: 29949.5 Da    PI: 6.2417
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G173500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-151462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W+++Ed  l++  +++G+g +W + +++ g++R++k+c++rw++yl
  Phvul.004G173500.1 14 RGPWSPDEDVTLKNFLEKHGTGgNWIALPKKAGLKRCGKSCRLRWLNYL 62
                        89*********************************************97 PP
2Myb_DNA-binding42.51.5e-1371111446
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +T+eEd+++  +    G++ W++Ia+ ++ gRt++++k++w++
  Phvul.004G173500.1  71 FTEEEDKIICTLYGTIGSR-WSLIAAQLP-GRTDNDVKNHWNT 111
                         9******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.372962IPR017930Myb domain
SMARTSM007174.1E-111364IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-2613109IPR009057Homeodomain-like
PfamPF002492.4E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-221569IPR009057Homeodomain-like
CDDcd001671.72E-81662No hitNo description
PROSITE profilePS5129418.90963117IPR017930Myb domain
SMARTSM007171.3E-1167115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2270116IPR009057Homeodomain-like
PfamPF002495.0E-1270111IPR001005SANT/Myb domain
CDDcd001672.71E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRAPCCDKS LVKRGPWSPD EDVTLKNFLE KHGTGGNWIA LPKKAGLKRC GKSCRLRWLN  60
YLRPHIKLGG FTEEEDKIIC TLYGTIGSRW SLIAAQLPGR TDNDVKNHWN TKLKKKFLAE  120
NTVATSYNNG TLSNTSSSHQ FSCFATQPQV EASLLNQKQN SAWFDPYNTF DLEQTPISVP  180
LPMPQELEAF DTGGSSYSAP PSKEVSMPVL NAASLAQQNK HTEWFGYDYA GEDDPNLLEF  240
VLDDLLINHG FESPSCVANQ DSFYSSSNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G173500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9028631e-139DQ902863.1 Glycine max transcription factor MYBJ6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152944.10.0hypothetical protein PHAVU_004G173500g
TrEMBLV7C6D80.0V7C6D8_PHAVU; Uncharacterized protein
STRINGXP_007152944.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.17e-71myb domain protein 36