PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G000700.1
Common NamePHAVU_005G000700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 315aa    MW: 35791.7 Da    PI: 9.0138
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G000700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-1522112198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k+ +ps  ++++ +++p +f++++g +   s+  t++ ++gr+W+++l  +k+++ +++++ W+eFv+   L  g  ++F+++g+s+f 
  Phvul.005G000700.1  22 FLKIILPSAIHATQ-MRIPEEFIKRFGDE--LSTVATITVPDGRVWKMRL--KKCGKDVFFSSKWREFVNYYSLGYGSHLIFRYVGNSKF- 106
                         77888888888876.********999865..88899999***********..**********************************9999. PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                          +v +f+
  Phvul.005G000700.1 107 -CVLIFD 112
                         .999987 PP
2B356.54.9e-182223041297
                         HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         ks+rl+++ +fa ++ ++   ++  +l++++g++Wev ++   +s++++++kGW +Fv++n+L egD +v++l++r+   l+++v+
  Phvul.005G000700.1 222 KSSRLYVSSEFAGKYLKP---GVGTMLQNSNGEQWEVSCSCHSRSRAMIISKGWAKFVRDNDLSEGDLCVLELIKRDPIVLKFTVR 304
                         7899********999544...34589*************99999999***************************987776777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-2316112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-2417113IPR015300DNA-binding pseudobarrel domain
CDDcd100173.87E-2020112No hitNo description
PROSITE profilePS5086312.26621114IPR003340B3 DNA binding domain
SMARTSM010194.3E-1822114IPR003340B3 DNA binding domain
PfamPF023628.7E-1422112IPR003340B3 DNA binding domain
PROSITE profilePS5086311.378211307IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-16213303IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-16216295IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.7E-11216307IPR003340B3 DNA binding domain
CDDcd100171.78E-18220304No hitNo description
PfamPF023621.3E-15221302IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEGRQRNYGG GSAPAERESK HFLKIILPSA IHATQMRIPE EFIKRFGDEL STVATITVPD  60
GRVWKMRLKK CGKDVFFSSK WREFVNYYSL GYGSHLIFRY VGNSKFCVLI FDITAAEICY  120
PPQTRGTNEP NSENWKRSKF EDQQQHQELV VGNGVETTDE DYVNLIRPSQ TKGRKKKCYY  180
SHGKQLKSGC SENHSSWEIT KDVATASDRL IAKNPFVTCT IKSSRLYVSS EFAGKYLKPG  240
VGTMLQNSNG EQWEVSCSCH SRSRAMIISK GWAKFVRDND LSEGDLCVLE LIKRDPIVLK  300
FTVRGEAQYY DVDV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G000700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-124AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148606.10.0hypothetical protein PHAVU_005G000700g
TrEMBLV7BU740.0V7BU74_PHAVU; Uncharacterized protein
STRINGXP_007148606.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14054820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-42B3 family protein