PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.005G002900.3

Common Name

PHAVU_005G002900g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

FAR1

Protein Properties

Length: 243aa MW: 27993.6 Da PI: 6.4255

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.005G002900.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.4	2.1e-27	78	166	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k ++ r++ra+tr gCka++++k ek+gkw++tk++++HnH+l+ Phvul.005G002900.3 78 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFSSVRKPRASTREGCKAMIHIKYEKSGKWVITKFVKDHNHPLV 166 9************************************999999989*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-25	78	166	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MESQLVDRND AMEVSGDVDL STYEVQVEQE TYKVDPNEGC RVLESSSGGE LGICDDDHAI 60 QEPYEGLEFE SEDAAKIFYD EYARRVGFVM RVMSCRRSER DGRILARRLG CNKEGYCVSI 120 RGKFSSVRKP RASTREGCKA MIHIKYEKSG KWVITKFVKD HNHPLVVSPR EARQTMDEKD 180 KKIQELTAEL RHKKRLCATY QEQLTSFMKV VEEHNEKLST KIHHVVNNLK EFESIDELLH 240 QT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.005G002900.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007148636.1	0.0	hypothetical protein PHAVU_005G002900g
Refseq	XP_007148637.1	0.0	hypothetical protein PHAVU_005G002900g
Refseq	XP_007148638.1	0.0	hypothetical protein PHAVU_005G002900g
TrEMBL	V7BRL2	1e-180	V7BRL2_PHAVU; Uncharacterized protein
STRING	XP_007148636.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-106	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Phvul.005G002900.3
Entrez Gene	18629615