PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G020000.1
Common NamePHAVU_005G020000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 452aa    MW: 50602.7 Da    PI: 5.6071
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G020000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.1e-07424425
                        ---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                        + C+f+ar G C  Gd+C F H
  Phvul.005G020000.1  4 RVCKFYAR-GACLKGDQCAFVH 24
                        67******.************* PP
2zf-CCCH17.57.3e-063554626
                        -SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                        C+f+++ G C +G++Ck+ H+
  Phvul.005G020000.1 35 CCFHRK-GVCAFGSKCKYKHV 54
                        **7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.413127IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-5226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-7325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4427IPR000571Zinc finger, CCCH-type
SMARTSM003560.263055IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.7983456IPR000571Zinc finger, CCCH-type
SuperFamilySSF578506.13E-11180259No hitNo description
Gene3DG3DSA:3.30.40.102.0E-10185254IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001629.31E-4188254No hitNo description
SMARTSM001845.8E-6189252IPR001841Zinc finger, RING-type
PROSITE profilePS5008911.825189253IPR001841Zinc finger, RING-type
PfamPF000977.9E-7189252IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180213222IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.188282311IPR000571Zinc finger, CCCH-type
SMARTSM003560.66282310IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MANRVCKFYA RGACLKGDQC AFVHEKKDED SGHVCCFHRK GVCAFGSKCK YKHVRASDGS  60
SSSNRRRSPL PKCLLNRTAK ETSWVPKGSK SSSSDNCARS SQHKNLLSPG NDVGSSSNAA  120
RSEILFCSFA AADCPLGFNC SRVHGNRCLY CREFCIHPTD REERENHLRT CDKKEKYLQA  180
LNDSQEVECN VCLERVLSKA KPSDCKFGLL PECDHAFCLS CIRNWRSSAP TSAMDMGSSS  240
GTANAVRTCP VCRKLSYFVI PSGIWYSTKE EKQEIIDNYK ANCKLINCKH FNFGNGNCPF  300
GASCFYKHTV KPGSYTWIHR RPPPHRRQNN ITMNEMNDML EMLSDVDLTN SIMRDSGFFD  360
DMDPFGMMDI SDSLGGESGP CFGPFDSDEE DTDFFQMAAL SEALVSGVDD FGPEDFVDEE  420
FNPMEAALLS MMMHSNIDDD DDEEEYSDEF Y*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G020000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148857.10.0hypothetical protein PHAVU_005G020000g
SwissprotQ6IDS61e-97C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLV7BWA60.0V7BWA6_PHAVU; Uncharacterized protein
STRINGXP_007148857.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151431113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.24e-97C3H family protein