PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G025300.1
Common NamePHAVU_005G025300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 363aa    MW: 42031.8 Da    PI: 8.5627
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G025300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188e-066687223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                        +C+ Cg sF+ + +L +H+++H
  Phvul.005G025300.1 66 TCGECGASFKKHAYLLQHMQSH 87
                        6*******************99 PP
2zf-C2H216.91.8e-0593117123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         y+C   dC  s++rk++L rH+  H
  Phvul.005G025300.1  93 YVCVvdDCQASYRRKDHLSRHLLQH 117
                         99*******************9887 PP
3zf-C2H215.64.4e-05122147123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         +kCp  +C++ Fs +sn krH    H
  Phvul.005G025300.1 122 FKCPveNCSTEFSLQSNVKRHVEEiH 147
                         89*******************98777 PP
4zf-C2H2201.9e-06162186123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         ++Cp   Cgk+F+  s+L++H  +H
  Phvul.005G025300.1 162 HTCPeiGCGKVFKFASQLRKHEDSH 186
                         79*******************9888 PP
5zf-C2H216.23e-05252277123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         ++C    C+ +FsrksnL +H ++ H
  Phvul.005G025300.1 252 FRCDfkGCSCTFSRKSNLDKHKKVvH 277
                         8999******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.61946IPR007087Zinc finger, C2H2
SMARTSM00355181941IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.0696592IPR007087Zinc finger, C2H2
SMARTSM003550.0346587IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-86691IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SuperFamilySSF576674.6E-1080119No hitNo description
Gene3DG3DSA:3.30.160.601.1E-992119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.02393117IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.61993122IPR007087Zinc finger, C2H2
PROSITE patternPS00028095117IPR007087Zinc finger, C2H2
SuperFamilySSF576673.75E-6103160No hitNo description
Gene3DG3DSA:3.30.160.601.6E-5120144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.93122152IPR007087Zinc finger, C2H2
SMARTSM003550.048122147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124147IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-5159186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.512162191IPR007087Zinc finger, C2H2
SMARTSM003550.0034162186IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280164186IPR007087Zinc finger, C2H2
SMARTSM003550.25194219IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280196219IPR007087Zinc finger, C2H2
SMARTSM0035545222243IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-6233274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.83E-9234291No hitNo description
PROSITE profilePS5015713.63252282IPR007087Zinc finger, C2H2
SMARTSM003550.0075252277IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280254277IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-5276306IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.3283309IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280285309IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGEAMEAEER PKFRDIRRYF CEFCGICRSK KTLITSHMNS HHKEEVEKAR AEREREPESE  60
AVTSNTCGEC GASFKKHAYL LQHMQSHSLE RPYVCVVDDC QASYRRKDHL SRHLLQHQGK  120
TFKCPVENCS TEFSLQSNVK RHVEEIHDDS STSTCDKTHK QHTCPEIGCG KVFKFASQLR  180
KHEDSHVKLE SVDVVCLEPG CMKHFTNVQC LQAHVKSTHQ YMTCETCGTK QLKKNIKRHL  240
RTHEPISSPE TFRCDFKGCS CTFSRKSNLD KHKKVVHFKE KPFVCGYADC GMRFAYKHVR  300
DNHEKTTKHV FTLGDFEKAD EEFRSRSRGG RKRKCPSVEM LLRNRVTSPS QLESWLFMGD  360
SE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-136826618182PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-136826618182PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G025300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150362e-32AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148921.10.0hypothetical protein PHAVU_005G025300g
SwissprotQ84MZ41e-138TF3A_ARATH; Transcription factor IIIA
TrEMBLV7BV360.0V7BV36_PHAVU; Uncharacterized protein
STRINGXP_007148921.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-127transcription factor IIIA