PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G025300.2
Common NamePHAVU_005G025300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 301aa    MW: 34676.5 Da    PI: 8.7403
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G025300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-053155123
                        EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                        y+C   dC  s++rk++L rH+  H
  Phvul.005G025300.2 31 YVCVvdDCQASYRRKDHLSRHLLQH 55
                        99*******************9887 PP
2zf-C2H2163.5e-056085123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                        +kCp  +C++ Fs +sn krH    H
  Phvul.005G025300.2 60 FKCPveNCSTEFSLQSNVKRHVEEiH 85
                        89*******************98777 PP
3zf-C2H220.31.5e-06100124123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         ++Cp   Cgk+F+  s+L++H  +H
  Phvul.005G025300.2 100 HTCPeiGCGKVFKFASQLRKHEDSH 124
                         79*******************9888 PP
4zf-C2H216.52.4e-05190215123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         ++C    C+ +FsrksnL +H ++ H
  Phvul.005G025300.2 190 FRCDfkGCSCTFSRKSNLDKHKKVvH 215
                         899*******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.2E-102557IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.44E-62857No hitNo description
PROSITE profilePS501579.6193160IPR007087Zinc finger, C2H2
SMARTSM003550.0233155IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803355IPR007087Zinc finger, C2H2
SuperFamilySSF576677.49E-65886No hitNo description
Gene3DG3DSA:3.30.160.601.3E-55882IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.936090IPR007087Zinc finger, C2H2
SMARTSM003550.0486085IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806285IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-597124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.512100129IPR007087Zinc finger, C2H2
SMARTSM003550.0034100124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102124IPR007087Zinc finger, C2H2
SMARTSM003550.25132157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134157IPR007087Zinc finger, C2H2
SMARTSM0035545160181IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-6171212IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.51E-9172229No hitNo description
SMARTSM003550.0075190215IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.63190220IPR007087Zinc finger, C2H2
PROSITE patternPS000280192215IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.8E-5214244IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.3221247IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280223247IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MFRLDGSVSG WETSCEAPSR MPHSPKIERP YVCVVDDCQA SYRRKDHLSR HLLQHQGKTF  60
KCPVENCSTE FSLQSNVKRH VEEIHDDSST STCDKTHKQH TCPEIGCGKV FKFASQLRKH  120
EDSHVKLESV DVVCLEPGCM KHFTNVQCLQ AHVKSTHQYM TCETCGTKQL KKNIKRHLRT  180
HEPISSPETF RCDFKGCSCT FSRKSNLDKH KKVVHFKEKP FVCGYADCGM RFAYKHVRDN  240
HEKTTKHVFT LGDFEKADEE FRSRSRGGRK RKCPSVEMLL RNRVTSPSQL ESWLFMGDSE  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A9e-132824419183Aart
2i13_B9e-132824419183Aart
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G025300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-32AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148920.10.0hypothetical protein PHAVU_005G025300g
SwissprotQ84MZ41e-106TF3A_ARATH; Transcription factor IIIA
TrEMBLV7BSH60.0V7BSH6_PHAVU; Uncharacterized protein
STRINGXP_007148921.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-102transcription factor IIIA