PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.005G025700.1

Common Name

PHAVU_005G025700g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Trihelix

Protein Properties

Length: 350aa MW: 38695.3 Da PI: 9.9291

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.005G025700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51	3.8e-16	46	130	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea++ ++ +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + ++ + s++p++++l+ Phvul.005G025700.1 46 EWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVAKHVssraNSTKSPKTQTQCKNKIESMKKRYRSESATTADA-----SSWPLYSRLD 130 5***********************************88777778889999************9999984.....57**9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.8E-20	44	130	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MEDKSEKQDD SHPSSLLLLP NHGTIKEDNS PRKAIGGGSD RLKRDEWSEG AVSTLLEAYE 60 AKWVLRNRAK LKGHDWEDVA KHVSSRANST KSPKTQTQCK NKIESMKKRY RSESATTADA 120 SSWPLYSRLD LLLRGTGPVS SLPPPPPTPT IAPSFQPPHA TTNNNQAMVL LEPPSLAASQ 180 PPPSVAPPPL TIAQNSHGSN GVERPAKEDG LGGKSSEHVS NKNLMDSDSS TPALYSEKEK 240 VRCNKRKMKS ENNNKRVRRN SNSNNNNNNN EDMDIAESIR WLAEVVVRSE QTRMDTMKEI 300 EKMRVEAEAK RGEMELKRTE IIANTQLEIA RIFASVNKGV DSSLRIGRS*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MEDKSEKQDD SHPSSLLLLP NHGTIKEDNS PRKAIGGGSD RLKRDEWSEG AVSTLLEAYE  60
AKWVLRNRAK LKGHDWEDVA KHVSSRANST KSPKTQTQCK NKIESMKKRY RSESATTADA  120
SSWPLYSRLD LLLRGTGPVS SLPPPPPTPT IAPSFQPPHA TTNNNQAMVL LEPPSLAASQ  180
PPPSVAPPPL TIAQNSHGSN GVERPAKEDG LGGKSSEHVS NKNLMDSDSS TPALYSEKEK  240
VRCNKRKMKS ENNNKRVRRN SNSNNNNNNN EDMDIAESIR WLAEVVVRSE QTRMDTMKEI  300
EKMRVEAEAK RGEMELKRTE IIANTQLEIA RIFASVNKGV DSSLRIGRS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.005G025700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007148925.1	0.0	hypothetical protein PHAVU_005G025700g
TrEMBL	V7BSI0	0.0	V7BSI0_PHAVU; Uncharacterized protein
STRING	XP_007148925.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4994	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-100	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Phvul.005G025700.1
Entrez Gene	18629864