PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G031300.1
Common NamePHAVU_005G031300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 215aa    MW: 24775.7 Da    PI: 6.6753
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G031300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.93.7e-1398191285
                         EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E...EE CS
                  B3   2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf...vv 81 
                          k+lt+sdv+ + +rl l k+++e+        +++ e+++++ ++d + ++++++++ + ++  yvl +GWk+F + ++L+  D+   ++
  Phvul.005G031300.1  98 HKKLTTSDVNVNqNRLLLNKNHVEKSflpllknDENIERGIQVPVYDAHQNTFSLTFKKWTNK-YYVLNGGWKDFFQVHKLQKDDSitvCI 187
                         589999*9987769*********999*****996667799*****************666664.6********************722244 PP

                         EEE- CS
                  B3  82 Fkld 85 
                         F+++
  Phvul.005G031300.1 188 FRHS 191
                         5543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.30598204IPR003340B3 DNA binding domain
SuperFamilySSF1019361.18E-1498198IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-1798201IPR015300DNA-binding pseudobarrel domain
PfamPF023624.3E-999194IPR003340B3 DNA binding domain
CDDcd100175.13E-1299198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MQGEKDPQKW HENIFGNKRC KHSQNIAEEL GEASRFKDGG DVSLENLDQE AEFLSESSSP  60
EVCFSSQEHL IRDSYSPSSL PAMENFREYI LEHGEPLHKK LTTSDVNVNQ NRLLLNKNHV  120
EKSFLPLLKN DENIERGIQV PVYDAHQNTF SLTFKKWTNK YYVLNGGWKD FFQVHKLQKD  180
DSITVCIFRH SSHNKLCFAL DYKKIGGDKI QNLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G031300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148990.11e-159hypothetical protein PHAVU_005G031300g
TrEMBLV7BSP31e-158V7BSP3_PHAVU; Uncharacterized protein
STRINGXP_007148990.11e-159(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-20B3 family protein