PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G032900.1
Common NamePHAVU_005G032900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 434aa    MW: 49239.9 Da    PI: 6.9729
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G032900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS394.41.2e-120144292373
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         ++lL++cA++v+sg+ ++a+  L+ +s+++spdg+++qR+++yf eAL  r+ ++ +++yk+++ps+ts   sse + ++k+f+e++P+lk
  Phvul.005G032900.1  14 ISLLIDCAKCVASGSIKNADIGLEYISQISSPDGNAVQRMVSYFSEALGYRIIKHLPGVYKSINPSKTS--LSSEDILVQKYFYELCPFLK 102
                         579**************************************************************9998..79****************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         fs+l++NqaI+ea+e e+ vHiiD+   +++QW+ Ll ++ +R++gpp+l+iTg+++     ke l +++  L++ A +l+ p++f + v+
  Phvul.005G032900.1 103 FSYLITNQAIVEAMECEKVVHIIDLHCCEPAQWIDLLLTFKNRQGGPPHLKITGIHE----TKEVLDQMNFHLTSEAGNLDFPLQFYP-VV 188
                         *********************************************************....9**************************.79 PP

                GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrll........................................................desv 218
                         ++led+++e+L vk+g+a+a+ +vlqlh+ll                                                          s 
  Phvul.005G032900.1 189 SKLEDVDFEKLPVKTGDAIAITSVLQLHSLLstdddmagrispaaaasmnlqravhmgqrtfaewlerdminayilspdsalsplsfGASP 279
                         9*****************************************************************************9998875555555 PP

                GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerh 309
                         ++      +L+++++l+Pk+vvv+eqe+++n+++++er+ +al++ysalfd+l++++ r+s er+k+Er+llg++i+n++aceg +r+erh
  Phvul.005G032900.1 280 KMGI----FLNAMRKLQPKLVVVTEQESNLNGSNLMERVDRALYFYSALFDCLDSTVMRTSVERQKLERMLLGEQIKNIIACEGVDRKERH 366
                         5555....*********************************************************************************** PP

                GRAS 310 etlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                         e+lekW +rle+aGF +vpls++   +ak ll++++s+ y+  ee+++l+ +W+drpL+svSaW
  Phvul.005G032900.1 367 EKLEKWIRRLEMAGFVKVPLSYNGRIEAKNLLQRYSSK-YKFREENDCLLVCWSDRPLFSVSAW 429
                         ************************************88.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.9561411IPR005202Transcription factor GRAS
PfamPF035144.2E-11814429IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MRELRWDSQG LNPISLLIDC AKCVASGSIK NADIGLEYIS QISSPDGNAV QRMVSYFSEA  60
LGYRIIKHLP GVYKSINPSK TSLSSEDILV QKYFYELCPF LKFSYLITNQ AIVEAMECEK  120
VVHIIDLHCC EPAQWIDLLL TFKNRQGGPP HLKITGIHET KEVLDQMNFH LTSEAGNLDF  180
PLQFYPVVSK LEDVDFEKLP VKTGDAIAIT SVLQLHSLLS TDDDMAGRIS PAAAASMNLQ  240
RAVHMGQRTF AEWLERDMIN AYILSPDSAL SPLSFGASPK MGIFLNAMRK LQPKLVVVTE  300
QESNLNGSNL MERVDRALYF YSALFDCLDS TVMRTSVERQ KLERMLLGEQ IKNIIACEGV  360
DRKERHEKLE KWIRRLEMAG FVKVPLSYNG RIEAKNLLQR YSSKYKFREE NDCLLVCWSD  420
RPLFSVSAWS FKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-5514307379Protein SCARECROW
5b3h_A5e-5514306378Protein SCARECROW
5b3h_D5e-5514306378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G032900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149009.10.0hypothetical protein PHAVU_005G032900g
SwissprotQ9LPR81e-149SCL3_ARATH; Scarecrow-like protein 3
TrEMBLV7BVF70.0V7BVF7_PHAVU; Uncharacterized protein
STRINGXP_007149009.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145191017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-152scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]