PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G046200.1
Common NamePHAVU_005G046200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 169aa    MW: 18798.9 Da    PI: 9.8698
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G046200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000894062123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C++ Fs+   L  H  +H
  Phvul.005G046200.1 40 FECKTCNRKFSSFQALGGHRASH 62
                        89**********99999998887 PP
2zf-C2H214.69.7e-0589111123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg+ Fs    L  H+r+H
  Phvul.005G046200.1  89 HECTICGQEFSLGQALGGHMRRH 111
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.194062IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.39E-840111No hitNo description
PfamPF139121.0E-104064IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4084067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-487111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.08589111IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-989113IPR007087Zinc finger, C2H2
PROSITE profilePS501579.84789116IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKRQREMDGL ATIDLANCLM LLSCPQQKKL QPKYVEGVEF ECKTCNRKFS SFQALGGHRA  60
SHKRSKLEGY EHKADAMSLS LGINKPKMHE CTICGQEFSL GQALGGHMRR HRASIKDHFS  120
PINHVAQVPV LKRSNSSRGM CMDLNLTPLE NDFKLLFGKM APNVGALV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G046200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-164AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149157.11e-123hypothetical protein PHAVU_005G046200g
SwissprotQ9SLD41e-40ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLV7BX721e-122V7BX72_PHAVU; Uncharacterized protein
STRINGXP_007149157.11e-123(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.15e-43C2H2 family protein