PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G047300.1
Common NamePHAVU_005G047300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 347aa    MW: 39487.5 Da    PI: 4.7221
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G047300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.81.6e-5661331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtdeelv +yL++k++g+++el ++i+evd+yk+ePwdLp k  + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatgkd
  Phvul.005G047300.1   6 LPPGFRFHPTDEELVAYYLERKITGRSIEL-DIIAEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATQAGYWKATGKD 95 
                         79****************************.99**************96435566888********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++v+s +++ vg+kktLv+ykgrap+g +t+Wvmheyrl
  Phvul.005G047300.1  96 RPVHS-QKKPVGMKKTLVYYKGRAPHGLRTNWVMHEYRL 133
                         *****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-643157IPR003441NAC domain
PROSITE profilePS5100560.3776157IPR003441NAC domain
PfamPF023654.7E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAPMSLPPGF RFHPTDEELV AYYLERKITG RSIELDIIAE VDLYKCEPWD LPDKSFLPSK  60
DMEWYFYSPR DRKYPNGSRT NRATQAGYWK ATGKDRPVHS QKKPVGMKKT LVYYKGRAPH  120
GLRTNWVMHE YRLIESVPGA ALSSLKDSYS LCRIFKKTIQ IPAKPSKEEE QAEDAKKESM  180
WISEEQMLGE DSSGTEFSRE METVEEKILN HEYPKFPCDA SSSDLTQGTC TPTDTGIAED  240
FQPHFACDEA NSATNSYTMG IGYASNLFQD VEIPSYGGVH YQLPYTPLVL EDFPQLTLPE  300
TKSTKPEVSD PCMLYDRYRD CMNGTLEEII SLCCTQDNSL PFPMLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-58115712165NO APICAL MERISTEM PROTEIN
1ut4_B1e-58115712165NO APICAL MERISTEM PROTEIN
1ut7_A1e-58115712165NO APICAL MERISTEM PROTEIN
1ut7_B1e-58115712165NO APICAL MERISTEM PROTEIN
3swm_A1e-58115715168NAC domain-containing protein 19
3swm_B1e-58115715168NAC domain-containing protein 19
3swm_C1e-58115715168NAC domain-containing protein 19
3swm_D1e-58115715168NAC domain-containing protein 19
3swp_A1e-58115715168NAC domain-containing protein 19
3swp_B1e-58115715168NAC domain-containing protein 19
3swp_C1e-58115715168NAC domain-containing protein 19
3swp_D1e-58115715168NAC domain-containing protein 19
4dul_A1e-58115712165NAC domain-containing protein 19
4dul_B1e-58115712165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G047300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-169AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149170.10.0hypothetical protein PHAVU_005G047300g
TrEMBLV7BT930.0V7BT93_PHAVU; Uncharacterized protein
STRINGXP_007149170.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105083341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-102NAC domain containing protein 20