PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G059000.1
Common NamePHAVU_005G059000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 310aa    MW: 35571.6 Da    PI: 8.187
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G059000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.72.4e-49251533128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         pGfrFhPtdeelv++yL++k+++k++++ + ik++diyk++PwdLp ++ +++eke yfF++r +ky+++ r+nr+t sg+Wkatg dk+v
  Phvul.005G059000.1  25 PGFRFHPTDEELVSFYLRRKLDKKPISI-DLIKQIDIYKYDPWDLPkSNGSGGEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPV 114
                         9***************************.99***************44555578899********************************** PP

                 NAM  93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +s    ++  +glkktLv+y+g+a kg+ktdW+mhe+rl
  Phvul.005G059000.1 115 YSYggeGNDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 153
                         **96555556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.58123187IPR003441NAC domain
SuperFamilySSF1019413.79E-5424187IPR003441NAC domain
PfamPF023656.6E-2525153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGVNENFNKD DDHHECVDDD EIPLPGFRFH PTDEELVSFY LRRKLDKKPI SIDLIKQIDI  60
YKYDPWDLPK SNGSGGEKEG YFFCRRGRKY RNSIRPNRVT GSGFWKATGI DKPVYSYGGE  120
GNDCIGLKKT LVYYRGSAGK GTKTDWMMHE FRLPSNTDTN TSLPNSRNYV DVPQEAEIWT  180
LCRIFKRNVS LRKHVPDLKQ VSAKRHAFYD KSSRTKNVEF DSANQESYIN FGGHYQNEQK  240
PFINYTNSDK RNQFNVMSQL CSTVAQQQPQ LSAPSSNLWS NPPGNDFFNF DNWDELGSVV  300
KLAVDSPSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-462519319171NO APICAL MERISTEM PROTEIN
1ut4_B7e-462519319171NO APICAL MERISTEM PROTEIN
1ut7_A7e-462519319171NO APICAL MERISTEM PROTEIN
1ut7_B7e-462519319171NO APICAL MERISTEM PROTEIN
3swm_A8e-462519322174NAC domain-containing protein 19
3swm_B8e-462519322174NAC domain-containing protein 19
3swm_C8e-462519322174NAC domain-containing protein 19
3swm_D8e-462519322174NAC domain-containing protein 19
3swp_A8e-462519322174NAC domain-containing protein 19
3swp_B8e-462519322174NAC domain-containing protein 19
3swp_C8e-462519322174NAC domain-containing protein 19
3swp_D8e-462519322174NAC domain-containing protein 19
4dul_A7e-462519319171NAC domain-containing protein 19
4dul_B7e-462519319171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G059000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968980.0BT096898.1 Soybean clone JCVI-FLGm-15F10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149303.10.0hypothetical protein PHAVU_005G059000g
SwissprotQ9SK554e-84NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLV7BTH20.0V7BTH2_PHAVU; Uncharacterized protein
STRINGXP_007149303.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-83NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]