PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G081800.1
Common NamePHAVU_005G081800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 242aa    MW: 26932.3 Da    PI: 8.6652
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G081800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-056688123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C k F++   L  H+++H
  Phvul.005G081800.1 66 YTCSFCRKEFKSAQALGGHMNVH 88
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-66392No hitNo description
Gene3DG3DSA:3.30.160.604.2E-46490IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.5E-66689IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.3446693IPR007087Zinc finger, C2H2
SMARTSM003550.0036688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MKRSSLMKDY THSCASKNPT KDFTHVANCY NKQNQMAKDL WECSSNSHSN ADQDYVNGFP  60
WPPRSYTCSF CRKEFKSAQA LGGHMNVHRR DRARLRQSPP AEGQGHMFNL NLDPTTTNPN  120
NSTSSWSLLP SSSSSPTHKP VTCTLPLFVS PTPSSPSSEL KRWVVVDGIL LNPLTTKAPE  180
HSKSKIPESL SGGVVEYDHV FAREDGCKVL KKGEILRMDL EIGLPRSYDL DLELRLGTTY  240
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-126188229superman protein
2l1o_A1e-126188229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G081800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149575.10.0hypothetical protein PHAVU_005G081800g
TrEMBLV7BUC11e-180V7BUC1_PHAVU; Uncharacterized protein
STRINGXP_007149575.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.19e-34C2H2 family protein