PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G084500.1
Common NamePHAVU_005G084500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 341aa    MW: 38295.1 Da    PI: 7.8759
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G084500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.91.4e-51141391128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrF Ptdeel+v+yL++kv+g++++l  +i+e+d+yk++Pw Lp+k+  +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk 
  Phvul.005G084500.1  14 LPPGFRFYPTDEELLVQYLCRKVAGHHFSL-PIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKI 103
                         79**************************99.88***************7777799***********************************9 PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
  Phvul.005G084500.1 104 ITT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139
                         999.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-6610163IPR003441NAC domain
PROSITE profilePS5100560.25114162IPR003441NAC domain
PfamPF023653.0E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGVPEKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLPIIAEID LYKFDPWVLP  60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY  120
VGKAPKGTKT NWIMHEYRLL DSSRKTTGTK LDDWVLCRIY KKNSSAQKAV QNGVVSSREH  180
TQYSNGSSSS SSSHLDDVLE SLPTIDERCF MMPRAHTVQQ QHEEKVNIEN LGAGGLVDWA  240
NPAVLNPVGD FVSGNNQVVQ EHTQGMVNYS GCNDLYVPTF CHVESALPQK MEEEVQSGVR  300
NQNSNNSWFL QNDFTQGFQN SVDTCGFKFP VQPVGFGFRH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-10811684171NO APICAL MERISTEM PROTEIN
1ut4_B1e-10811684171NO APICAL MERISTEM PROTEIN
1ut7_A1e-10811684171NO APICAL MERISTEM PROTEIN
1ut7_B1e-10811684171NO APICAL MERISTEM PROTEIN
3swm_A1e-10711687174NAC domain-containing protein 19
3swm_B1e-10711687174NAC domain-containing protein 19
3swm_C1e-10711687174NAC domain-containing protein 19
3swm_D1e-10711687174NAC domain-containing protein 19
3swp_A1e-10711687174NAC domain-containing protein 19
3swp_B1e-10711687174NAC domain-containing protein 19
3swp_C1e-10711687174NAC domain-containing protein 19
3swp_D1e-10711687174NAC domain-containing protein 19
4dul_A1e-10811684171NAC domain-containing protein 19
4dul_B1e-10811684171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269|PubMed:25005917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00360DAPTransfer from AT3G15500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G084500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269|PubMed:25005917}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619240.0EU661924.1 Glycine max NAC domain protein (NAC27) mRNA, complete cds.
GenBankKT0312180.0KT031218.1 Glycine max clone HN_CCL_59 NAC transcription factor (Glyma13g35550.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149614.10.0hypothetical protein PHAVU_005G084500g
SwissprotQ9SQL01e-134JA2_SOLLC; NAC domain-containing protein JA2
TrEMBLV7BX330.0V7BX33_PHAVU; Uncharacterized protein
STRINGXP_007149614.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44293360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-122NAC family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]