PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G089000.1
Common NamePHAVU_005G089000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 459aa    MW: 50840.1 Da    PI: 7.2173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G089000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.24.6e-063483871054
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         + R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Phvul.005G089000.1 348 KMRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 387
                         57889999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.493338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.94E-7348391No hitNo description
SMARTSM003530.0017348393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-11348405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-10352395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MADDQFQASG NWWDTARNVR YESRTSHSSS SAITNIGNFG WQASDMAEMK PRSSMDSSSV  60
VFHDSQNKLQ PPDSTTSTDP NLHIMDLGLS SQAMDWNQAS LLRGEKGTEN SFRSMLQENL  120
SSSRTNFQQE TGVELSQQVQ WRSEKMFSAD SSSNEFKQVN RGFSLDQSKF SPQYSSGDST  180
VTSQGLPSSN FQMDSSALYG TPSILQGLLG PDHNNQPQQQ QPSSFENRSI SFPYPTTYGL  240
NSNNDLVPSW SKVPQFLRGS PPKQPPSNQL HFTNNAPFWN ASEAANFKDI RASFFPSLQP  300
PFSTPNFEVQ SKNISEVRER GTVGKKSGNE PAPKRTRNET PSPMPAFKMR KEKMGDRITA  360
LQQLVSPFGK TDTASVLSEA IEYIKFLHEQ VTALSTPYMK TGAPIQIQQN SGKCKETEGP  420
KQDLRSRGLC LVPVSSTFPV THETTVDFWT PTFGGASR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G089000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149667.10.0hypothetical protein PHAVU_005G089000g
SwissprotQ8GXT32e-85BH123_ARATH; Transcription factor bHLH123
TrEMBLV7BYK40.0V7BYK4_PHAVU; Uncharacterized protein
STRINGXP_007149667.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-85bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]