PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G102800.1
Common NamePHAVU_005G102800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 197aa    MW: 22503.7 Da    PI: 6.6796
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G102800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-101364255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                        r+  +++E++RR+++++ ++eL +llP+ +   p++ +   +   +A+eYIksL+
  Phvul.005G102800.1 13 RVDRKIVEKNRRNHMKNLYSELNSLLPSyN---PKQVVALPDQIDEATEYIKSLE 64
                        667899**********************66...8888****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-12982IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.60E-6968No hitNo description
PROSITE profilePS5088811.3821163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-121385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-61364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-41769IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDQQQENQPS STRVDRKIVE KNRRNHMKNL YSELNSLLPS YNPKQVVALP DQIDEATEYI  60
KSLEAKVRMA KEKKERLIME RKRTRSGFSS DFEARGNLKP PKMEIHETGS VLRVILTCGI  120
DDHFVFCEII RILHEENVDV INTSYSVVGD SVIHVVLGEV GQSMFQSGAS KVSEKLKWFV  180
NRSICDEEMD PNVMGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G102800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150409e-98AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149840.11e-145hypothetical protein PHAVU_005G102800g
TrEMBLV7BV551e-143V7BV55_PHAVU; Uncharacterized protein
STRINGXP_007149840.11e-144(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-36bHLH family protein