PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.005G102900.1

Common Name

PHAVU_005G102900g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bHLH

Protein Properties

Length: 179aa MW: 20440.3 Da PI: 8.7313

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.005G102900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.3	3.7e-10	19	68	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++E++RR+++++ ++L +llP++ ++ + ls + +A++YIk+L+ Phvul.005G102900.1 19 RIVEKNRRNHMKNLCSNLNSLLPNNNIPREGELSRGDLIDEATNYIKNLE 68 589*******************76899999*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.306	13	67	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-4	19	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-12	19	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-7	19	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-11	19	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MGDQQQRDQP SSIKGLERRI VEKNRRNHMK NLCSNLNSLL PNNNIPREGE LSRGDLIDEA 60 TNYIKNLETK VKMAQQKKES LLLQKKRSRS ASSSSYEAPK IEIHEMDSSL QIILMCTHDN 120 QFILTEIIRI LLEETIEVIS VNSSITGNSM LHVVKAQEGT TTISERLKRF VNEHRENI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.005G102900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007149841.1	1e-127	hypothetical protein PHAVU_005G102900g
TrEMBL	V7BXR1	1e-125	V7BXR1_PHAVU; Uncharacterized protein
STRING	XP_007149841.1	1e-126	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22397	3	4

Link Out ? help Back to Top
Phytozome	Phvul.005G102900.1
Entrez Gene	18630664