PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G112100.1
Common NamePHAVU_005G112100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 241aa    MW: 27376.3 Da    PI: 9.9422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G112100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.8e-071101501055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+++ ++   L++l+P++     kK++  + Le+A +Y++ Lq
  Phvul.005G112100.1 110 RQRRQKLSEKTRYLQKLMPWD-----KKMDQGTLLEEAYKYVRFLQ 150
                         9*******************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.769100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0011106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-10106159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.63E-5108152No hitNo description
Gene3DG3DSA:4.10.280.103.4E-9109157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-4110150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MIMYPGDGSS LDPMFSGTSL QSLLSLNPSI LEDGFPTLAS LTDDPTLIPQ PSEVPKLLVP  60
KTEPSQPFKF FPQYHPTPFL HLPQLRSPDQ PQPKRQRMES PLIPQSNLAR QRRQKLSEKT  120
RYLQKLMPWD KKMDQGTLLE EAYKYVRFLQ AQFRVLQSMP SHSSSSSSSS RQNTAAVFVD  180
LEKLNRSQLL QVLVNSPVAQ TMLYSQGFCV FSLEQLSLLR QLSDRKHQHH DSAFSKSVFN  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G112100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149941.11e-173hypothetical protein PHAVU_005G112100g
TrEMBLV7BY101e-171V7BY10_PHAVU; Uncharacterized protein
STRINGXP_007149941.11e-172(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134262124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.12e-23bHLH family protein