PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.005G116000.1

Common Name

PHAVU_005G116000g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

WRKY

Protein Properties

Length: 618aa MW: 66710.8 Da PI: 6.412

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.005G116000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97	1.3e-30	361	419	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Phvul.005G116000.1 361 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 419 7*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-33	345	421	IPR003657	WRKY domain
SuperFamily	SSF118290	1.19E-27	353	421	IPR003657	WRKY domain
PROSITE profile	PS50811	29.792	355	421	IPR003657	WRKY domain
SMART	SM00774	1.0E-36	360	420	IPR003657	WRKY domain
Pfam	PF03106	1.2E-26	362	419	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence Send to blast
MARGGGLSID SDPIGSFFPH KPVVLNSFPE DSNTINNSSS QHKWKLGPNM DVTVTRNRSP 60 SSSPNTNTNT TSTIPFQVNH TSDNKRPHID EMDFFPNKTD DDHNKGINNF ASASTSAPPS 120 LDHLVHTHDH SSTPAILELK VNTGLNLLTT NTGSDHSMVD DEASTNSEEK RAKSEMVVLQ 180 AELEKMKVEN HRLRNMLDQV NTSYNALQMH LVSLMQEQKE EEGEQKVFDG KLDEEKQSGN 240 GALVPRQFMD LGLASNADNN EPSHSSSVGR SQDLSKSPIN NEVASKEFDT KKNGSVSDEG 300 LDQDKKEFVR GIEREDSPSE GIAANSNVPK FSPPRNVDQA EATMRKARVS VRARSEAPMI 360 TDGCQWRKYG QKMAKGNPCP RAYYRCTMAA GCPVRKQVQR CAEDRTILIT TYEGNHNHPL 420 PPAAMAMAQT TSSAARMLLS GSMSSADGLM NANFLTRTLL PCSSSMATIS ASAPFPTVTL 480 DLTQSPNPLQ FPKPPNQFQI PFPGVPQNFA NSSASLLPQI FGQALYNQSK FSGLQMSQDA 540 DPSPLSNQSQ RPPPHLADTV SAATAAIAAD PNFTAALAAA ITSIIGGAQP NNSTSTNNNG 600 TTSNNTNNAN VTSNNNK*

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence Send to blast

MARGGGLSID SDPIGSFFPH KPVVLNSFPE DSNTINNSSS QHKWKLGPNM DVTVTRNRSP  60
SSSPNTNTNT TSTIPFQVNH TSDNKRPHID EMDFFPNKTD DDHNKGINNF ASASTSAPPS  120
LDHLVHTHDH SSTPAILELK VNTGLNLLTT NTGSDHSMVD DEASTNSEEK RAKSEMVVLQ  180
AELEKMKVEN HRLRNMLDQV NTSYNALQMH LVSLMQEQKE EEGEQKVFDG KLDEEKQSGN  240
GALVPRQFMD LGLASNADNN EPSHSSSVGR SQDLSKSPIN NEVASKEFDT KKNGSVSDEG  300
LDQDKKEFVR GIEREDSPSE GIAANSNVPK FSPPRNVDQA EATMRKARVS VRARSEAPMI  360
TDGCQWRKYG QKMAKGNPCP RAYYRCTMAA GCPVRKQVQR CAEDRTILIT TYEGNHNHPL  420
PPAAMAMAQT TSSAARMLLS GSMSSADGLM NANFLTRTLL PCSSSMATIS ASAPFPTVTL  480
DLTQSPNPLQ FPKPPNQFQI PFPGVPQNFA NSSASLLPQI FGQALYNQSK FSGLQMSQDA  540
DPSPLSNQSQ RPPPHLADTV SAATAAIAAD PNFTAALAAA ITSIIGGAQP NNSTSTNNNG  600
TTSNNTNNAN VTSNNNK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-22	347	423	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269\|PubMed:12000796, ECO:0000269\|PubMed:25733771}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.005G116000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU019575	0.0	EU019575.1 Glycine max WRKY36 (WRKY36) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007149982.1	0.0	hypothetical protein PHAVU_005G116000g
Swissprot	Q9C519	1e-134	WRKY6_ARATH; WRKY transcription factor 6
TrEMBL	V7BZA4	0.0	V7BZA4_PHAVU; Uncharacterized protein
STRING	XP_007149982.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF866	34	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-115	WRKY family protein

Link Out ? help Back to Top
Phytozome	Phvul.005G116000.1
Entrez Gene	18630795

Publications ? help Back to Top
Zhou F, et al. High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression. Plant J., 2004. 39(6): p. 920-32 [PMID:15341634] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Chai J,Liu J,Zhou J,Xing D Mitogen-activated protein kinase 6 regulates NPR1 gene expression and activation during leaf senescence induced by salicylic acid. J. Exp. Bot., 2014. 65(22): p. 6513-28 [PMID:25210078] Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. Plant Cell, 2014. 26(12): p. 4656-79 [PMID:25549671] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Bakshi M, et al. WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis. BMC Plant Biol., 2015. 15: p. 305 [PMID:26718529] Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development. PLoS Genet., 2016. 12(2): p. e1005833 [PMID:26829043] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116] Li H, et al. BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis. Mol Plant, 2017. 10(4): p. 545-559 [PMID:28089951] Stetter MG,Benz M,Ludewig U Increased root hair density by loss of WRKY6 in Arabidopsis thaliana. PeerJ, 2017. 5: p. e2891 [PMID:28149680] Zhou X, et al. StMYB44 negatively regulates phosphate transport by suppressing expression of PHOSPHATE1 in potato. J. Exp. Bot., 2017. 68(5): p. 1265-1281 [PMID:28338870] Bakshi M, et al. Piriformospora indica Reprograms Gene Expression in Arabidopsis Phosphate Metabolism Mutants But Does Not Compensate for Phosphate Limitation. Front Microbiol, 2017. 8: p. 1262 [PMID:28747898] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486]