PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G117600.1
Common NamePHAVU_005G117600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family YABBY
Protein Properties Length: 186aa    MW: 20704.6 Da    PI: 8.7699
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G117600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2321.4e-7161625170
               YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 
                          ++e+vCyv+CnfCnt lavsvP +sl+++vtvrCGhC++llsvn+  + q  ++++       ++     k ++++l++++  +++  +s
  Phvul.005G117600.1   6 MAAERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQPFPSQET------QHFSTVAKLQRQHLSVQEACSKELGSS 90 
                         5789********************************************9999999996......344444455555555544444333333 PP

               YABBY  96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                          +    s ++d+e pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  Phvul.005G117600.1  91 SKC--KSFESDHEQPRIPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 162
                         333..25678899999999.9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.8E-737162IPR006780YABBY protein
SuperFamilySSF470952.23E-8107155IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.9E-5110156IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSMDMMAAER VCYVHCNFCN TTLAVSVPCS SLLTIVTVRC GHCANLLSVN MGASLQPFPS  60
QETQHFSTVA KLQRQHLSVQ EACSKELGSS SKCKSFESDH EQPRIPPIRP PEKRQRVPSA  120
YNRFIKEEIQ RIKASNPDIS HREAFSTAAK NWAHFPHIHF GLKLDGNKQA KLDQGDGTQK  180
SNGFY*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G117600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0951271e-137BT095127.1 Soybean clone JCVI-FLGm-6F4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150001.11e-139hypothetical protein PHAVU_005G117600g
SwissprotQ9XFB05e-78YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLV7BY801e-137V7BY80_PHAVU; Uncharacterized protein
STRINGXP_007150001.11e-138(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-71YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]