PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G117600.2
Common NamePHAVU_005G117600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family YABBY
Protein Properties Length: 179aa    MW: 19933.7 Da    PI: 8.5898
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G117600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY212.91.1e-6561555170
               YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 
                          ++e+vCyv+CnfCnt lavsvP +sl+++vtvrCGhC++llsvn+  + q  ++++              + ++++l++++  +++  +s
  Phvul.005G117600.2   6 MAAERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQPFPSQET-------------QLQRQHLSVQEACSKELGSS 83 
                         5789*****************************************9999999988875.............33333433333333222222 PP

               YABBY  96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                          +    s ++d+e pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  Phvul.005G117600.2  84 SKC--KSFESDHEQPRIPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 155
                         222..24567889999999.9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.1E-737155IPR006780YABBY protein
SuperFamilySSF470952.09E-8100148IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.6E-5103149IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MSMDMMAAER VCYVHCNFCN TTLAVSVPCS SLLTIVTVRC GHCANLLSVN MGASLQPFPS  60
QETQLQRQHL SVQEACSKEL GSSSKCKSFE SDHEQPRIPP IRPPEKRQRV PSAYNRFIKE  120
EIQRIKASNP DISHREAFST AAKNWAHFPH IHFGLKLDGN KQAKLDQGDG TQKSNGFY*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G117600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0951270.0BT095127.1 Soybean clone JCVI-FLGm-6F4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150002.11e-133hypothetical protein PHAVU_005G117600g
SwissprotQ9XFB07e-81YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLV7BZC81e-132V7BZC8_PHAVU; Uncharacterized protein
STRINGXP_007150001.11e-121(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-74YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]