PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G122500.1
Common NamePHAVU_005G122500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 255aa    MW: 28535.6 Da    PI: 7.4468
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G122500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.74.1e-4841341127
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                         lppGfrF Pt+eelv +yL+++++g+++++++vi+ +di+ vePw+Lp+    ++++++++w+fFs+r++++++g r++r+t+sgyWkatg
  Phvul.005G122500.1   4 LPPGFRFYPTEEELVAFYLHNQLQGQTHDTSRVIPVIDINGVEPWNLPTlageRCRGDTEQWFFFSPRQERETRGGRPSRTTASGYWKATG 94 
                         79****************************9****************9546666666888******************************* PP

                 NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                         +  +v+s++++++g+kkt+vfykg+ap+g+kt+W mhey+
  Phvul.005G122500.1  95 SPCHVYSSDNKVIGMKKTMVFYKGKAPTGRKTKWKMHEYK 134
                         ***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-502159IPR003441NAC domain
PROSITE profilePS5100549.9344161IPR003441NAC domain
PfamPF023652.6E-255134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MADLPPGFRF YPTEEELVAF YLHNQLQGQT HDTSRVIPVI DINGVEPWNL PTLAGERCRG  60
DTEQWFFFSP RQERETRGGR PSRTTASGYW KATGSPCHVY SSDNKVIGMK KTMVFYKGKA  120
PTGRKTKWKM HEYKAIQHSH QSNTTSPELR HEFSLCRVYV ISGNFRSFDR RPLEMARAEL  180
GADENRGAAS TSGQPRAAVV DGSSSSDTSH SGDAHNHEAG AGSSGIHLNA SNRVEEPFWE  240
WEELIGHDPY LKHA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-38415917163NO APICAL MERISTEM PROTEIN
1ut4_B1e-38415917163NO APICAL MERISTEM PROTEIN
1ut7_A1e-38415917163NO APICAL MERISTEM PROTEIN
1ut7_B1e-38415917163NO APICAL MERISTEM PROTEIN
3swm_A1e-38415920166NAC domain-containing protein 19
3swm_B1e-38415920166NAC domain-containing protein 19
3swm_C1e-38415920166NAC domain-containing protein 19
3swm_D1e-38415920166NAC domain-containing protein 19
3swp_A1e-38415920166NAC domain-containing protein 19
3swp_B1e-38415920166NAC domain-containing protein 19
3swp_C1e-38415920166NAC domain-containing protein 19
3swp_D1e-38415920166NAC domain-containing protein 19
4dul_A1e-38415917163NAC domain-containing protein 19
4dul_B1e-38415917163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G122500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-122AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150056.10.0hypothetical protein PHAVU_005G122500g
SwissprotQ9FMR35e-88NAC90_ARATH; NAC domain-containing protein 90
TrEMBLV7BYD80.0V7BYD8_PHAVU; Uncharacterized protein
STRINGXP_007150056.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-87NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]